LINC02384

Summary

LINC02384 (long intergenic non-protein coding RNA 2384, HGNC:53308) is a long non-coding RNA gene on chromosome 12q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53308
Approved symbol	LINC02384
Name	long intergenic non-protein coding RNA 2384
Location	12q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251301
Ensembl biotype	lncRNA
Entrez	100507195
RNAcentral	URS000075B0EC — lncRNA, 574 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 110 — 110 lncRNA

ENST00000360485, ENST00000441255, ENST00000536094, ENST00000536112, ENST00000539404, ENST00000541707, ENST00000542875, ENST00000546086, ENST00000653144, ENST00000686524, ENST00000692611, ENST00000693550, ENST00000818915, ENST00000818916, ENST00000818917, ENST00000818918, ENST00000818919, ENST00000818920, ENST00000818921, ENST00000818922, ENST00000818923, ENST00000818924, ENST00000818925, ENST00000818926, ENST00000818927, ENST00000818928, ENST00000818929, ENST00000818930, ENST00000818931, ENST00000818932, ENST00000818933, ENST00000818934, ENST00000818935, ENST00000818936, ENST00000818937, ENST00000818938, ENST00000818939, ENST00000818940, ENST00000818941, ENST00000818942, ENST00000818943, ENST00000818944, ENST00000818945, ENST00000818946, ENST00000818947, ENST00000818948, ENST00000818949, ENST00000818950, ENST00000818951, ENST00000818952, ENST00000818953, ENST00000818954, ENST00000818955, ENST00000818956, ENST00000818957, ENST00000818958, ENST00000818959, ENST00000818960, ENST00000818961, ENST00000818962, ENST00000818963, ENST00000818964, ENST00000818965, ENST00000818966, ENST00000818967, ENST00000818968, ENST00000818969, ENST00000818970, ENST00000818971, ENST00000818972, ENST00000818973, ENST00000818974, ENST00000818975, ENST00000818976, ENST00000818977, ENST00000818978, ENST00000818979, ENST00000818980, ENST00000818981, ENST00000818982, ENST00000818983, ENST00000818984, ENST00000818985, ENST00000818986, ENST00000818987, ENST00000818988, ENST00000818989, ENST00000818990, ENST00000818991, ENST00000818992, ENST00000818993, ENST00000818994, ENST00000818995, ENST00000818996, ENST00000818997, ENST00000818998, ENST00000818999, ENST00000819000, ENST00000819001, ENST00000819002, ENST00000819003, ENST00000819004, ENST00000819005, ENST00000819006, ENST00000819007, ENST00000819008, ENST00000819009, ENST00000819010, ENST00000819011, ENST00000819012

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000360485 — 4 exons

Exon	Start	End
ENSE00002239849	68442064	68442141
ENSE00002317412	68433284	68433371
ENSE00004223373	68451367	68451696
ENSE00004223412	68431835	68432131

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 96.69.

FANTOM5 (CAGE): breadth broad, TPM avg 1.4360 / max 149.7701, expressed in 217 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
131984	0.9721	154
131983	0.1938	71
131982	0.1705	68
131981	0.0468	19
131978	0.0258	12
131980	0.0177	8
131977	0.0094	6

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	96.69	gold quality
bone marrow cell	CL:0002092	89.88	gold quality
lymph node	UBERON:0000029	89.38	gold quality
leukocyte	CL:0000738	86.98	gold quality
monocyte	CL:0000576	86.86	gold quality
colonic epithelium	UBERON:0000397	86.03	gold quality
bone marrow	UBERON:0002371	85.05	gold quality
blood	UBERON:0000178	81.21	gold quality
tonsil	UBERON:0002372	80.39	gold quality
spleen	UBERON:0002106	79.52	gold quality
vermiform appendix	UBERON:0001154	79.37	gold quality
thymus	UBERON:0002370	78.88	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.74	gold quality
rectum	UBERON:0001052	76.79	gold quality
mucosa of transverse colon	UBERON:0004991	74.65	gold quality
adult mammalian kidney	UBERON:0000082	73.39	gold quality
duodenum	UBERON:0002114	72.91	gold quality
right atrium auricular region	UBERON:0006631	71.70	gold quality
kidney	UBERON:0002113	71.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.66	gold quality
gall bladder	UBERON:0002110	68.95	gold quality
small intestine	UBERON:0002108	68.92	gold quality
liver	UBERON:0002107	68.79	gold quality
small intestine Peyer’s patch	UBERON:0003454	68.49	gold quality
metanephros cortex	UBERON:0010533	68.40	gold quality
placenta	UBERON:0001987	68.20	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.42	gold quality
smooth muscle tissue	UBERON:0001135	66.76	gold quality
sural nerve	UBERON:0015488	66.61	silver quality
transverse colon	UBERON:0001157	66.12	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	12.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.