LINC02387

Summary

LINC02387 (long intergenic non-protein coding RNA 2387, HGNC:53313) is a long non-coding RNA gene on chromosome 12p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53313
Approved symbol	LINC02387
Name	long intergenic non-protein coding RNA 2387
Location	12p11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256232
Ensembl biotype	lncRNA
Entrez	101929027
RNAcentral	URS0000BC43D1 — lncRNA, 899 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000541749, ENST00000815346, ENST00000815347, ENST00000815348

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000541749 — 2 exons

Exon	Start	End
ENSE00004217242	31363473	31363795
ENSE00004217244	31368749	31369301

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 88.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1776 / max 23.3394, expressed in 79 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
130349	0.1308	54
130350	0.0372	14
130351	0.0096	2

Top tissues by expression

196 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.00	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.55	gold quality
bone marrow cell	CL:0002092	66.38	silver quality
ganglionic eminence	UBERON:0004023	60.54	gold quality
buccal mucosa cell	CL:0002336	58.07	gold quality
right lobe of liver	UBERON:0001114	53.21	gold quality
mucosa of transverse colon	UBERON:0004991	52.52	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.78	gold quality
gall bladder	UBERON:0002110	51.39	gold quality
rectum	UBERON:0001052	50.18	gold quality
prefrontal cortex	UBERON:0000451	49.78	gold quality
body of stomach	UBERON:0001161	48.73	gold quality
stomach	UBERON:0000945	48.12	gold quality
lymph node	UBERON:0000029	47.95	silver quality
islet of Langerhans	UBERON:0000006	47.67	gold quality
tendon of biceps brachii	UBERON:0008188	47.58	gold quality
ovary	UBERON:0000992	47.57	silver quality
muscle of leg	UBERON:0001383	46.88	silver quality
pancreas	UBERON:0001264	46.80	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	46.54	gold quality
amniotic fluid	UBERON:0000173	46.38	gold quality
hindlimb stylopod muscle	UBERON:0004252	45.91	silver quality
cerebellar cortex	UBERON:0002129	45.72	silver quality
gastrocnemius	UBERON:0001388	45.68	silver quality
cerebellar hemisphere	UBERON:0002245	45.61	silver quality
nasal cavity mucosa	UBERON:0001826	45.56	gold quality
tendon	UBERON:0000043	45.40	gold quality
left coronary artery	UBERON:0001626	45.13	gold quality
smooth muscle tissue	UBERON:0001135	44.63	gold quality
heart left ventricle	UBERON:0002084	44.61	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.