LINC02388

Summary

LINC02388 (long intergenic non-protein coding RNA 2388, HGNC:53315) is a long non-coding RNA gene on chromosome 12q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53315
Approved symbol	LINC02388
Name	long intergenic non-protein coding RNA 2388
Location	12q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257259
Ensembl biotype	lncRNA
Entrez	101927653
RNAcentral	URS000075DCA9 — lncRNA, 1990 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000550678, ENST00000552201, ENST00000648243, ENST00000654861, ENST00000668012, ENST00000670826, ENST00000736251, ENST00000736252, ENST00000736253, ENST00000736254

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550678 — 8 exons

Exon	Start	End
ENSE00002332950	58608878	58609549
ENSE00002373900	58569275	58569368
ENSE00002381073	58781571	58781716
ENSE00002388506	58570702	58570780
ENSE00002406505	58616935	58617128
ENSE00002408542	58571328	58571432
ENSE00002409611	58569104	58569159
ENSE00002426402	58565960	58566588

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 82.70.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0983 / max 21.2010, expressed in 34 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
131785	0.0983	34

Top tissues by expression

230 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.70	gold quality
apex of heart	UBERON:0002098	78.87	gold quality
left coronary artery	UBERON:0001626	72.34	gold quality
right testis	UBERON:0004534	72.15	gold quality
left testis	UBERON:0004533	71.02	gold quality
coronary artery	UBERON:0001621	70.20	gold quality
colonic epithelium	UBERON:0000397	70.14	silver quality
testis	UBERON:0000473	69.80	gold quality
right atrium auricular region	UBERON:0006631	68.59	gold quality
cardiac atrium	UBERON:0002081	67.87	gold quality
right ovary	UBERON:0002118	67.76	gold quality
right adrenal gland cortex	UBERON:0035827	67.76	gold quality
heart left ventricle	UBERON:0002084	67.27	gold quality
right coronary artery	UBERON:0001625	67.17	gold quality
buccal mucosa cell	CL:0002336	67.11	gold quality
heart	UBERON:0000948	66.88	gold quality
cardiac ventricle	UBERON:0002082	66.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.79	silver quality
right adrenal gland	UBERON:0001233	66.45	gold quality
primary visual cortex	UBERON:0002436	66.36	gold quality
omental fat pad	UBERON:0010414	65.80	gold quality
peritoneum	UBERON:0002358	65.73	gold quality
ventricular zone	UBERON:0003053	65.20	gold quality
gastrocnemius	UBERON:0001388	64.92	gold quality
islet of Langerhans	UBERON:0000006	64.79	gold quality
adipose tissue of abdominal region	UBERON:0007808	64.40	gold quality
sural nerve	UBERON:0015488	64.14	silver quality
muscle of leg	UBERON:0001383	64.00	gold quality
right lobe of liver	UBERON:0001114	63.92	gold quality
ganglionic eminence	UBERON:0004023	63.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.