LINC02390

Summary

LINC02390 (long intergenic non-protein coding RNA 2390, HGNC:53317) is a long non-coding RNA gene on chromosome 12p13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53317
Approved symbol	LINC02390
Name	long intergenic non-protein coding RNA 2390
Location	12p13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256582
Ensembl biotype	lncRNA
Entrez	105369652
RNAcentral	URS00000719BA — lncRNA, 560 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000541404

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000541404 — 2 exons

Exon	Start	End
ENSE00002277154	9708872	9709350
ENSE00002316196	9704077	9704157

Expression profiles

Bgee: expression breadth ubiquitous, 108 present calls, max score 70.74.

Top tissues by expression

108 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	70.74	gold quality
bone marrow cell	CL:0002092	69.09	silver quality
lymph node	UBERON:0000029	66.06	gold quality
blood	UBERON:0000178	64.24	gold quality
bone marrow	UBERON:0002371	64.05	gold quality
spleen	UBERON:0002106	63.13	gold quality
ganglionic eminence	UBERON:0004023	62.42	gold quality
right lobe of liver	UBERON:0001114	62.36	gold quality
tonsil	UBERON:0002372	62.00	gold quality
liver	UBERON:0002107	60.76	gold quality
small intestine Peyer’s patch	UBERON:0003454	59.91	gold quality
small intestine	UBERON:0002108	59.89	gold quality
gall bladder	UBERON:0002110	58.71	gold quality
vermiform appendix	UBERON:0001154	57.89	gold quality
monocyte	CL:0000576	55.72	gold quality
duodenum	UBERON:0002114	55.21	gold quality
islet of Langerhans	UBERON:0000006	54.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.83	gold quality
lung	UBERON:0002048	53.67	gold quality
upper lobe of left lung	UBERON:0008952	53.67	gold quality
calcaneal tendon	UBERON:0003701	52.65	silver quality
mucosa of stomach	UBERON:0001199	52.17	gold quality
placenta	UBERON:0001987	52.14	gold quality
prefrontal cortex	UBERON:0000451	51.67	gold quality
urinary bladder	UBERON:0001255	51.28	gold quality
left uterine tube	UBERON:0001303	49.71	gold quality
multicellular organism	UBERON:0000468	49.59	gold quality
pancreas	UBERON:0001264	49.38	gold quality
rectum	UBERON:0001052	49.35	gold quality
muscle of leg	UBERON:0001383	48.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.