LINC02391

Summary

LINC02391 (long intergenic non-protein coding RNA 2391, HGNC:53318) is a long non-coding RNA gene on chromosome 12q22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53318
Approved symbol	LINC02391
Name	long intergenic non-protein coding RNA 2391
Location	12q22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000277851
Ensembl biotype	lncRNA
Entrez	101930023
RNAcentral	URS0002A29C0B — lncRNA, 2301 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 29 — 29 lncRNA

ENST00000615716, ENST00000847433, ENST00000847434, ENST00000847435, ENST00000847436, ENST00000847437, ENST00000847438, ENST00000847439, ENST00000847440, ENST00000847441, ENST00000847442, ENST00000847443, ENST00000847444, ENST00000847445, ENST00000847446, ENST00000847447, ENST00000847448, ENST00000847449, ENST00000847450, ENST00000847451, ENST00000847452, ENST00000847453, ENST00000847454, ENST00000847455, ENST00000847456, ENST00000847457, ENST00000847458, ENST00000847459, ENST00000847460

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000615716 — 5 exons

Exon	Start	End
ENSE00003715750	92268921	92268979
ENSE00003721462	92363591	92363832
ENSE00003725619	92272536	92272616
ENSE00003733479	92357531	92357674
ENSE00003751972	92247697	92248029

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 69.13.

FANTOM5 (CAGE): breadth broad, TPM avg 0.3580 / max 17.5903, expressed in 195 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
132620	0.3580	195

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	69.13	silver quality
colonic epithelium	UBERON:0000397	66.12	silver quality
monocyte	CL:0000576	64.80	gold quality
leukocyte	CL:0000738	64.35	gold quality
tonsil	UBERON:0002372	61.22	gold quality
lymph node	UBERON:0000029	60.20	gold quality
bone marrow	UBERON:0002371	59.01	silver quality
stromal cell of endometrium	CL:0002255	58.89	gold quality
granulocyte	CL:0000094	56.04	gold quality
gall bladder	UBERON:0002110	55.92	gold quality
spleen	UBERON:0002106	55.73	gold quality
urinary bladder	UBERON:0001255	55.13	gold quality
ovary	UBERON:0000992	54.48	gold quality
smooth muscle tissue	UBERON:0001135	54.26	gold quality
left ovary	UBERON:0002119	53.99	gold quality
right ovary	UBERON:0002118	53.71	gold quality
subcutaneous adipose tissue	UBERON:0002190	53.70	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.98	gold quality
blood	UBERON:0000178	52.87	gold quality
placenta	UBERON:0001987	52.74	gold quality
right coronary artery	UBERON:0001625	52.72	gold quality
thoracic mammary gland	UBERON:0005200	52.67	gold quality
vermiform appendix	UBERON:0001154	52.35	gold quality
prefrontal cortex	UBERON:0000451	52.14	gold quality
adipose tissue	UBERON:0001013	52.06	gold quality
corpus callosum	UBERON:0002336	51.62	gold quality
right atrium auricular region	UBERON:0006631	51.52	gold quality
right adrenal gland cortex	UBERON:0035827	51.36	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	51.35	gold quality
sural nerve	UBERON:0015488	51.35	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.51

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.