LINC02392

Summary

LINC02392 (long intergenic non-protein coding RNA 2392, HGNC:53319) is a long non-coding RNA gene on chromosome 12q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53319
Approved symbol	LINC02392
Name	long intergenic non-protein coding RNA 2392
Location	12q21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncRNA-ECVSR
Ensembl gene	ENSG00000258183
Ensembl biotype	lncRNA
Entrez	105369893
RNAcentral	URS0000A7673B — lncRNA, 879 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000548172, ENST00000549313, ENST00000549470, ENST00000658748, ENST00000658788, ENST00000670390

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548172 — 3 exons

Exon	Start	End
ENSE00002370194	90293323	90293560
ENSE00002397120	90295357	90295492
ENSE00002414238	90296085	90296247

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 77.20.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1244 / max 17.2896, expressed in 57 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
127287	0.1244	57

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.20	gold quality
stromal cell of endometrium	CL:0002255	68.29	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.84	silver quality
skeletal muscle tissue	UBERON:0001134	66.85	gold quality
sural nerve	UBERON:0015488	65.77	silver quality
ventricular zone	UBERON:0003053	62.15	gold quality
colonic epithelium	UBERON:0000397	61.03	silver quality
bone marrow	UBERON:0002371	57.00	gold quality
ganglionic eminence	UBERON:0004023	56.78	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.28	silver quality
primary visual cortex	UBERON:0002436	56.18	gold quality
islet of Langerhans	UBERON:0000006	54.83	gold quality
prefrontal cortex	UBERON:0000451	52.91	gold quality
lymph node	UBERON:0000029	52.74	gold quality
blood	UBERON:0000178	52.70	gold quality
monocyte	CL:0000576	51.94	gold quality
endometrium	UBERON:0001295	51.73	gold quality
calcaneal tendon	UBERON:0003701	51.52	silver quality
duodenum	UBERON:0002114	50.81	gold quality
gall bladder	UBERON:0002110	50.48	gold quality
placenta	UBERON:0001987	50.35	gold quality
superior frontal gyrus	UBERON:0002661	50.17	gold quality
muscle of leg	UBERON:0001383	49.27	gold quality
liver	UBERON:0002107	48.95	silver quality
gastrocnemius	UBERON:0001388	48.80	gold quality
frontal cortex	UBERON:0001870	48.72	gold quality
right adrenal gland cortex	UBERON:0035827	47.98	gold quality
cortex of kidney	UBERON:0001225	47.32	silver quality
heart left ventricle	UBERON:0002084	47.29	gold quality
tibial nerve	UBERON:0001323	46.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.