LINC02393

Summary

LINC02393 (long intergenic non-protein coding RNA 2393, HGNC:53320) is a long non-coding RNA gene on chromosome 12q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53320
Approved symbol	LINC02393
Name	long intergenic non-protein coding RNA 2393
Location	12q24.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ37505
Ensembl gene	ENSG00000256597
Ensembl biotype	lncRNA
Entrez	400087
RNAcentral	URS000075D06B — lncRNA, 2020 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000536342, ENST00000614177, ENST00000662498

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000536342 — 3 exons

Exon	Start	End
ENSE00002220092	127882556	127882707
ENSE00002278924	127881617	127881731
ENSE00002312313	127882853	127882991

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 91.60.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0343 / max 7.1836, expressed in 15 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
206954	0.0343	15

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.60	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.87	gold quality
placenta	UBERON:0001987	68.80	gold quality
lymph node	UBERON:0000029	62.97	gold quality
monocyte	CL:0000576	61.20	gold quality
gall bladder	UBERON:0002110	60.17	gold quality
adrenal tissue	UBERON:0018303	58.52	gold quality
ventricular zone	UBERON:0003053	58.14	silver quality
islet of Langerhans	UBERON:0000006	56.88	gold quality
prefrontal cortex	UBERON:0000451	56.51	gold quality
ganglionic eminence	UBERON:0004023	56.47	gold quality
right adrenal gland cortex	UBERON:0035827	55.98	gold quality
primary visual cortex	UBERON:0002436	55.73	gold quality
muscle of leg	UBERON:0001383	54.98	gold quality
upper lobe of left lung	UBERON:0008952	54.06	gold quality
endometrium	UBERON:0001295	53.17	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.15	gold quality
right adrenal gland	UBERON:0001233	52.66	gold quality
frontal cortex	UBERON:0001870	52.53	gold quality
superior frontal gyrus	UBERON:0002661	51.74	gold quality
ascending aorta	UBERON:0001496	51.40	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.20	gold quality
blood	UBERON:0000178	51.11	silver quality
adrenal gland	UBERON:0002369	50.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.48	gold quality
cerebral cortex	UBERON:0000956	49.84	gold quality
right frontal lobe	UBERON:0002810	49.67	gold quality
left adrenal gland cortex	UBERON:0035825	49.62	gold quality
cerebellum	UBERON:0002037	49.45	gold quality
cerebellar cortex	UBERON:0002129	48.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.