LINC02394

Summary

LINC02394 (long intergenic non-protein coding RNA 2394, HGNC:53321) is a long non-coding RNA gene on chromosome 12q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53321
Approved symbol	LINC02394
Name	long intergenic non-protein coding RNA 2394
Location	12q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258332
Ensembl biotype	lncRNA
Entrez	105369841
RNAcentral	URS00026A1A82 — lncRNA, 1930 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000549140, ENST00000647598

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000549140 — 3 exons

Exon	Start	End
ENSE00002373225	74039024	74039457
ENSE00003837689	74045658	74045833
ENSE00003874423	74048493	74048863

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 77.51.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.80	gold quality
ventricular zone	UBERON:0003053	61.54	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.55	gold quality
leukocyte	CL:0000738	55.28	silver quality
monocyte	CL:0000576	53.76	gold quality
bone marrow	UBERON:0002371	53.60	silver quality
granulocyte	CL:0000094	52.25	gold quality
cortex of kidney	UBERON:0001225	51.90	gold quality
blood	UBERON:0000178	50.16	silver quality
prefrontal cortex	UBERON:0000451	49.86	gold quality
primary visual cortex	UBERON:0002436	48.92	silver quality
testis	UBERON:0000473	48.31	gold quality
liver	UBERON:0002107	48.25	silver quality
placenta	UBERON:0001987	47.81	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.52	gold quality
left testis	UBERON:0004533	47.46	gold quality
vermiform appendix	UBERON:0001154	47.35	gold quality
heart left ventricle	UBERON:0002084	47.11	gold quality
muscle of leg	UBERON:0001383	47.09	gold quality
right testis	UBERON:0004534	47.03	gold quality
islet of Langerhans	UBERON:0000006	46.57	silver quality
apex of heart	UBERON:0002098	45.84	gold quality
kidney	UBERON:0002113	45.84	silver quality
gastrocnemius	UBERON:0001388	45.82	silver quality
lymph node	UBERON:0000029	45.69	silver quality
descending thoracic aorta	UBERON:0002345	45.46	gold quality
right coronary artery	UBERON:0001625	45.37	gold quality
heart	UBERON:0000948	44.80	gold quality
frontal cortex	UBERON:0001870	44.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.