LINC02396

Summary

LINC02396 (long intergenic non-protein coding RNA 2396, HGNC:27463) is a long non-coding RNA gene on chromosome 12q13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27463
Approved symbol	LINC02396
Name	long intergenic non-protein coding RNA 2396
Location	12q13.12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258135
Ensembl biotype	lncRNA
Entrez	283332
RNAcentral	URS000075ABB7 — lncRNA, 2353 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000546911, ENST00000550636, ENST00000551922, ENST00000552628, ENST00000552768

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546911 — 2 exons

Exon	Start	End
ENSE00002354313	49911211	49911278
ENSE00002420261	49908882	49909113

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 76.12.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0058 / max 7.6684, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
130889	0.0058	3

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	76.12	gold quality
left testis	UBERON:0004533	71.80	gold quality
testis	UBERON:0000473	71.28	gold quality
right testis	UBERON:0004534	70.43	gold quality
bone marrow	UBERON:0002371	67.50	gold quality
monocyte	CL:0000576	67.35	gold quality
gall bladder	UBERON:0002110	60.92	gold quality
blood	UBERON:0000178	59.15	gold quality
primary visual cortex	UBERON:0002436	58.58	gold quality
gastrocnemius	UBERON:0001388	57.48	gold quality
multicellular organism	UBERON:0000468	53.22	gold quality
ascending aorta	UBERON:0001496	53.21	gold quality
thoracic aorta	UBERON:0001515	52.89	gold quality
left coronary artery	UBERON:0001626	52.84	gold quality
smooth muscle tissue	UBERON:0001135	52.17	gold quality
Ammon’s horn	UBERON:0001954	52.16	gold quality
calcaneal tendon	UBERON:0003701	52.13	gold quality
lower esophagus muscularis layer	UBERON:0035833	51.92	gold quality
corpus callosum	UBERON:0002336	51.18	silver quality
subcutaneous adipose tissue	UBERON:0002190	50.87	gold quality
colon	UBERON:0001155	50.80	gold quality
muscle layer of sigmoid colon	UBERON:0035805	50.74	gold quality
cerebellum	UBERON:0002037	50.47	gold quality
cerebellar cortex	UBERON:0002129	50.36	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	50.31	gold quality
cerebellar hemisphere	UBERON:0002245	50.10	gold quality
fundus of stomach	UBERON:0001160	49.95	gold quality
right atrium auricular region	UBERON:0006631	49.92	gold quality
omental fat pad	UBERON:0010414	49.75	gold quality
right hemisphere of cerebellum	UBERON:0014890	49.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.