LINC02400

Summary

LINC02400 (long intergenic non-protein coding RNA 2400, HGNC:53327) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53327
Approved symbol	LINC02400
Name	long intergenic non-protein coding RNA 2400
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257784
Ensembl biotype	lncRNA
Entrez	101927038
RNAcentral	URS0000A77528 — lncRNA, 408 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000548210, ENST00000552712, ENST00000653328, ENST00000657863, ENST00000659353, ENST00000667995, ENST00000671469, ENST00000730140, ENST00000730141, ENST00000730142

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548210 — 3 exons

Exon	Start	End
ENSE00002385424	41764738	41764806
ENSE00002428005	41764179	41764259
ENSE00004058389	41765320	41765569

Expression profiles

Bgee: expression breadth broad, 80 present calls, max score 91.92.

Top tissues by expression

189 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	91.92	gold quality
right testis	UBERON:0004534	86.93	gold quality
kidney epithelium	UBERON:0004819	85.37	gold quality
left testis	UBERON:0004533	85.20	gold quality
left ventricle myocardium	UBERON:0006566	83.54	gold quality
cardiac muscle of right atrium	UBERON:0003379	83.47	gold quality
epithelial cell of pancreas	CL:0000083	83.10	gold quality
testis	UBERON:0000473	82.39	gold quality
upper arm skin	UBERON:0004263	79.31	gold quality
islet of Langerhans	UBERON:0000006	79.01	gold quality
nasal cavity epithelium	UBERON:0005384	75.50	gold quality
myocardium	UBERON:0002349	71.43	gold quality
buccal mucosa cell	CL:0002336	70.85	gold quality
layer of synovial tissue	UBERON:0007616	67.53	gold quality
tibialis anterior	UBERON:0001385	65.68	silver quality
quadriceps femoris	UBERON:0001377	65.35	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	64.24	gold quality
cardia of stomach	UBERON:0001162	64.21	gold quality
vastus lateralis	UBERON:0001379	64.17	gold quality
heart right ventricle	UBERON:0002080	64.05	gold quality
substantia nigra	UBERON:0002038	64.02	silver quality
saphenous vein	UBERON:0007318	63.59	gold quality
caecum	UBERON:0001153	63.57	gold quality
pericardium	UBERON:0002407	63.44	gold quality
inferior vagus X ganglion	UBERON:0005363	63.29	gold quality
subthalamic nucleus	UBERON:0001906	63.16	gold quality
thymus	UBERON:0002370	63.09	gold quality
dorsal plus ventral thalamus	UBERON:0001897	62.96	gold quality
cerebellar vermis	UBERON:0004720	62.91	gold quality
superior surface of tongue	UBERON:0007371	62.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.