LINC02401

Summary

LINC02401 (long intergenic non-protein coding RNA 2401, HGNC:53328) is a long non-coding RNA gene on chromosome 12q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53328
Approved symbol	LINC02401
Name	long intergenic non-protein coding RNA 2401
Location	12q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257762
Ensembl biotype	lncRNA
Entrez	101929084
RNAcentral	URS000004F0B2 — lncRNA, 3059 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000550185, ENST00000551174, ENST00000654623, ENST00000657489, ENST00000658835, ENST00000661201, ENST00000661990, ENST00000663320, ENST00000664607, ENST00000664661, ENST00000666598, ENST00000666854, ENST00000667519, ENST00000667724, ENST00000669702

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550185 — 5 exons

Exon	Start	End
ENSE00002334391	103548668	103548980
ENSE00002338625	103550462	103550571
ENSE00002339497	103557412	103559815
ENSE00002380385	103547794	103547925
ENSE00002396232	103549498	103549597

Expression profiles

Bgee: expression breadth broad, 31 present calls, max score 82.52.

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.52	silver quality
colonic epithelium	UBERON:0000397	76.44	gold quality
left testis	UBERON:0004533	67.53	gold quality
right testis	UBERON:0004534	66.12	gold quality
sperm	CL:0000019	65.59	gold quality
testis	UBERON:0000473	65.14	gold quality
upper leg skin	UBERON:0004262	58.14	silver quality
mucosa of paranasal sinus	UBERON:0005030	55.33	gold quality
sural nerve	UBERON:0015488	54.42	silver quality
oocyte	CL:0000023	52.79	gold quality
monocyte	CL:0000576	51.83	silver quality
deltoid	UBERON:0001476	49.83	gold quality
lateral globus pallidus	UBERON:0002476	49.67	gold quality
muscle of leg	UBERON:0001383	49.31	gold quality
lateral nuclear group of thalamus	UBERON:0002736	48.99	gold quality
uterine cervix	UBERON:0000002	48.60	gold quality
gastrocnemius	UBERON:0001388	48.07	gold quality
substantia nigra pars reticulata	UBERON:0001966	47.59	gold quality
thymus	UBERON:0002370	47.35	gold quality
skin of hip	UBERON:0001554	46.61	silver quality
subthalamic nucleus	UBERON:0001906	46.47	gold quality
dorsal root ganglion	UBERON:0000044	46.28	gold quality
globus pallidus	UBERON:0001875	46.18	gold quality
body of pancreas	UBERON:0001150	45.75	silver quality
right lobe of liver	UBERON:0001114	45.50	silver quality
putamen	UBERON:0001874	45.41	gold quality
dorsal plus ventral thalamus	UBERON:0001897	45.18	gold quality
medial globus pallidus	UBERON:0002477	45.18	gold quality
anatomical system	UBERON:0000467	44.84	gold quality
substantia nigra pars compacta	UBERON:0001965	44.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.