LINC02403

Summary

LINC02403 (long intergenic non-protein coding RNA 2403, HGNC:53330) is a long non-coding RNA gene on chromosome 12q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53330
Approved symbol	LINC02403
Name	long intergenic non-protein coding RNA 2403
Location	12q14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257541
Ensembl biotype	lncRNA
Entrez	105369785
RNAcentral	URS0000769D62 — lncRNA, 484 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000548215

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548215 — 4 exons

Exon	Start	End
ENSE00002328571	58088438	58088550
ENSE00002360520	58088208	58088321
ENSE00004227033	58093327	58093386
ENSE00004227034	58087853	58088112

Expression profiles

Bgee: expression breadth broad, 42 present calls, max score 92.87.

Top tissues by expression

42 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.87	silver quality
tonsil	UBERON:0002372	66.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.09	gold quality
blood	UBERON:0000178	54.65	gold quality
islet of Langerhans	UBERON:0000006	54.34	gold quality
monocyte	CL:0000576	52.00	silver quality
muscle of leg	UBERON:0001383	50.96	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.89	gold quality
gastrocnemius	UBERON:0001388	50.36	gold quality
cerebellar hemisphere	UBERON:0002245	47.66	silver quality
heart	UBERON:0000948	46.98	gold quality
heart left ventricle	UBERON:0002084	46.82	gold quality
cerebral cortex	UBERON:0000956	46.28	gold quality
muscle layer of sigmoid colon	UBERON:0035805	45.93	gold quality
tibial artery	UBERON:0007610	45.73	silver quality
ascending aorta	UBERON:0001496	44.66	gold quality
saliva-secreting gland	UBERON:0001044	44.27	gold quality
right atrium auricular region	UBERON:0006631	43.34	silver quality
esophagus mucosa	UBERON:0002469	43.28	silver quality
apex of heart	UBERON:0002098	43.00	silver quality
minor salivary gland	UBERON:0001830	42.13	gold quality
transverse colon	UBERON:0001157	42.09	silver quality
nucleus accumbens	UBERON:0001882	40.97	silver quality
small intestine Peyer’s patch	UBERON:0003454	40.95	silver quality
skin of leg	UBERON:0001511	40.33	silver quality
left lobe of thyroid gland	UBERON:0001120	40.14	silver quality
omental fat pad	UBERON:0010414	40.03	silver quality
vagina	UBERON:0000996	39.76	silver quality
Ammon’s horn	UBERON:0001954	39.56	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	39.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.33

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.