LINC02404

Summary

LINC02404 (long intergenic non-protein coding RNA 2404, HGNC:53331) is a long non-coding RNA gene on chromosome 12q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53331
Approved symbol	LINC02404
Name	long intergenic non-protein coding RNA 2404
Location	12q21.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257893
Ensembl biotype	lncRNA
Entrez	105369900
RNAcentral	URS0002A36143 — lncRNA, 1638 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000546710, ENST00000668890, ENST00000801876, ENST00000801877

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546710 — 2 exons

Exon	Start	End
ENSE00002386848	91879567	91880655
ENSE00002414755	91877391	91877489

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 78.12.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0204 / max 6.1503, expressed in 11 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
127300	0.0204	11

Top tissues by expression

95 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.12	gold quality
duodenum	UBERON:0002114	77.40	gold quality
ganglionic eminence	UBERON:0004023	59.96	gold quality
intestine	UBERON:0000160	56.27	gold quality
liver	UBERON:0002107	55.94	gold quality
colon	UBERON:0001155	55.75	gold quality
small intestine	UBERON:0002108	54.35	gold quality
monocyte	CL:0000576	52.66	silver quality
placenta	UBERON:0001987	52.55	gold quality
bone marrow	UBERON:0002371	51.30	silver quality
islet of Langerhans	UBERON:0000006	50.71	gold quality
pancreas	UBERON:0001264	49.85	gold quality
stomach	UBERON:0000945	49.45	gold quality
body of stomach	UBERON:0001161	49.34	gold quality
blood	UBERON:0000178	49.10	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.06	gold quality
muscle of leg	UBERON:0001383	48.41	gold quality
tonsil	UBERON:0002372	48.37	gold quality
urinary bladder	UBERON:0001255	48.12	gold quality
prefrontal cortex	UBERON:0000451	48.07	silver quality
gall bladder	UBERON:0002110	47.48	gold quality
calcaneal tendon	UBERON:0003701	47.43	silver quality
cerebellar cortex	UBERON:0002129	47.40	silver quality
cerebellar hemisphere	UBERON:0002245	47.30	silver quality
gastrocnemius	UBERON:0001388	47.28	gold quality
endometrium	UBERON:0001295	46.99	silver quality
lung	UBERON:0002048	46.57	silver quality
body of pancreas	UBERON:0001150	46.32	silver quality
lymph node	UBERON:0000029	46.11	silver quality
right hemisphere of cerebellum	UBERON:0014890	45.51	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.