LINC02406

Summary

LINC02406 (long intergenic non-protein coding RNA 2406, HGNC:53334) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53334
Approved symbol	LINC02406
Name	long intergenic non-protein coding RNA 2406
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258144
Ensembl biotype	lncRNA
Entrez	105369730
RNAcentral	URS00026A1FD9 — lncRNA, 602 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000553029, ENST00000659930, ENST00000662938, ENST00000668449, ENST00000749806, ENST00000749807, ENST00000749808

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553029 — 3 exons

Exon	Start	End
ENSE00002354904	39092466	39092682
ENSE00002396494	39087713	39087992
ENSE00002424789	39092826	39092874

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 86.46.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.46	gold quality
sural nerve	UBERON:0015488	71.64	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.52	gold quality
ganglionic eminence	UBERON:0004023	64.36	gold quality
ventricular zone	UBERON:0003053	61.75	gold quality
amygdala	UBERON:0001876	54.81	gold quality
monocyte	CL:0000576	54.75	gold quality
caudate nucleus	UBERON:0001873	53.47	gold quality
prefrontal cortex	UBERON:0000451	53.28	gold quality
nucleus accumbens	UBERON:0001882	53.25	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.43	gold quality
endometrium	UBERON:0001295	52.40	silver quality
cortex of kidney	UBERON:0001225	52.19	gold quality
substantia nigra	UBERON:0002038	52.07	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.96	gold quality
primary visual cortex	UBERON:0002436	50.96	gold quality
left testis	UBERON:0004533	50.91	gold quality
placenta	UBERON:0001987	50.87	gold quality
liver	UBERON:0002107	50.63	silver quality
blood	UBERON:0000178	50.58	gold quality
testis	UBERON:0000473	50.58	gold quality
right testis	UBERON:0004534	50.31	gold quality
brain	UBERON:0000955	50.23	gold quality
putamen	UBERON:0001874	50.03	gold quality
hypothalamus	UBERON:0001898	49.67	gold quality
anterior cingulate cortex	UBERON:0009835	49.36	gold quality
frontal cortex	UBERON:0001870	49.08	gold quality
kidney	UBERON:0002113	48.61	gold quality
superior frontal gyrus	UBERON:0002661	48.44	silver quality
cerebral cortex	UBERON:0000956	48.41	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.