LINC02408

Summary

LINC02408 (long intergenic non-protein coding RNA 2408, HGNC:53337) is a long non-coding RNA gene on chromosome 12q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53337
Approved symbol	LINC02408
Name	long intergenic non-protein coding RNA 2408
Location	12q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000203585
Ensembl biotype	lncRNA
Entrez	100507175
RNAcentral	URS000075EBDD — lncRNA, 1771 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000400306, ENST00000538573, ENST00000650195, ENST00000774321, ENST00000774322

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000400306 — 3 exons

Exon	Start	End
ENSE00002236170	67549123	67549164
ENSE00002241033	67565514	67567126
ENSE00002266006	67520082	67520192

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 74.92.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.92	gold quality
liver	UBERON:0002107	65.00	silver quality
skeletal muscle tissue	UBERON:0001134	58.71	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.23	gold quality
cortical plate	UBERON:0005343	56.94	silver quality
lymph node	UBERON:0000029	55.49	gold quality
muscle of leg	UBERON:0001383	55.07	gold quality
gastrocnemius	UBERON:0001388	54.77	gold quality
rectum	UBERON:0001052	54.11	gold quality
prefrontal cortex	UBERON:0000451	53.36	gold quality
placenta	UBERON:0001987	52.82	gold quality
monocyte	CL:0000576	52.81	silver quality
islet of Langerhans	UBERON:0000006	52.65	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.34	gold quality
urinary bladder	UBERON:0001255	51.35	gold quality
lung	UBERON:0002048	50.83	gold quality
blood	UBERON:0000178	50.61	silver quality
right lung	UBERON:0002167	49.77	gold quality
primary visual cortex	UBERON:0002436	49.73	gold quality
gall bladder	UBERON:0002110	48.55	gold quality
upper lobe of left lung	UBERON:0008952	48.46	gold quality
vermiform appendix	UBERON:0001154	48.02	gold quality
calcaneal tendon	UBERON:0003701	47.96	silver quality
duodenum	UBERON:0002114	47.62	silver quality
endometrium	UBERON:0001295	46.58	gold quality
frontal cortex	UBERON:0001870	46.54	gold quality
smooth muscle tissue	UBERON:0001135	45.93	silver quality
fallopian tube	UBERON:0003889	45.73	gold quality
right atrium auricular region	UBERON:0006631	45.14	gold quality
superior frontal gyrus	UBERON:0002661	44.98	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.