LINC02409

Summary

LINC02409 (long intergenic non-protein coding RNA 2409, HGNC:53338) is a long non-coding RNA gene on chromosome 12q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53338
Approved symbol	LINC02409
Name	long intergenic non-protein coding RNA 2409
Location	12q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257920
Ensembl biotype	lncRNA
Entrez	105369929
RNAcentral	URS00026A1C9D — lncRNA, 2387 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000547515, ENST00000829400, ENST00000829401

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547515 — 3 exons

Exon	Start	End
ENSE00002377933	97272692	97272797
ENSE00002387272	97274463	97274713
ENSE00002389658	97275991	97276209

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 66.51.

Top tissues by expression

43 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	66.51	silver quality
monocyte	CL:0000576	58.18	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.42	gold quality
fallopian tube	UBERON:0003889	54.86	gold quality
endometrium	UBERON:0001295	54.38	silver quality
prefrontal cortex	UBERON:0000451	51.64	gold quality
adult mammalian kidney	UBERON:0000082	50.34	gold quality
kidney	UBERON:0002113	48.71	gold quality
cortex of kidney	UBERON:0001225	47.60	gold quality
right lobe of thyroid gland	UBERON:0001119	46.89	gold quality
endocervix	UBERON:0000458	45.99	gold quality
adenohypophysis	UBERON:0002196	45.78	gold quality
thyroid gland	UBERON:0002046	45.62	gold quality
left lobe of thyroid gland	UBERON:0001120	44.98	gold quality
blood	UBERON:0000178	44.33	silver quality
pituitary gland	UBERON:0000007	43.37	gold quality
multicellular organism	UBERON:0000468	43.11	gold quality
caudate nucleus	UBERON:0001873	42.64	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.05	silver quality
tibial nerve	UBERON:0001323	41.87	silver quality
body of stomach	UBERON:0001161	41.76	silver quality
anterior cingulate cortex	UBERON:0009835	41.76	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.56	silver quality
left testis	UBERON:0004533	41.12	silver quality
ovary	UBERON:0000992	40.97	silver quality
nucleus accumbens	UBERON:0001882	40.97	silver quality
hypothalamus	UBERON:0001898	40.76	gold quality
stomach	UBERON:0000945	40.47	silver quality
testis	UBERON:0000473	40.43	silver quality
substantia nigra	UBERON:0002038	39.98	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.