LINC02411

Summary

LINC02411 (long intergenic non-protein coding RNA 2411, HGNC:53340) is a long non-coding RNA gene on chromosome 12q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53340
Approved symbol	LINC02411
Name	long intergenic non-protein coding RNA 2411
Location	12q24.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256022
Ensembl biotype	lncRNA
Entrez	101927637
RNAcentral	URS000075E045 — lncRNA, 723 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000540490, ENST00000544251, ENST00000546180, ENST00000656677, ENST00000659673, ENST00000662161, ENST00000663397, ENST00000666224, ENST00000667656, ENST00000668337, ENST00000669225, ENST00000670083, ENST00000670513, ENST00000670939, ENST00000747456, ENST00000747457

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000540490 — 3 exons

Exon	Start	End
ENSE00002230068	127635944	127636125
ENSE00002250536	127635358	127635402
ENSE00003863370	127633636	127634768

Expression profiles

Bgee: expression breadth broad, 49 present calls, max score 78.70.

Top tissues by expression

49 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.70	gold quality
left testis	UBERON:0004533	72.25	gold quality
testis	UBERON:0000473	71.43	gold quality
right testis	UBERON:0004534	68.84	gold quality
multicellular organism	UBERON:0000468	56.20	gold quality
prefrontal cortex	UBERON:0000451	55.11	gold quality
adult mammalian kidney	UBERON:0000082	54.87	gold quality
skin of leg	UBERON:0001511	54.32	gold quality
stomach	UBERON:0000945	53.80	gold quality
fundus of stomach	UBERON:0001160	52.85	gold quality
blood	UBERON:0000178	52.40	silver quality
superior frontal gyrus	UBERON:0002661	52.05	gold quality
body of stomach	UBERON:0001161	51.79	gold quality
monocyte	CL:0000576	51.13	silver quality
tibial nerve	UBERON:0001323	49.86	gold quality
gastrocnemius	UBERON:0001388	49.73	gold quality
frontal cortex	UBERON:0001870	48.38	gold quality
heart left ventricle	UBERON:0002084	47.91	gold quality
cerebral cortex	UBERON:0000956	46.20	gold quality
body of pancreas	UBERON:0001150	46.17	silver quality
brain	UBERON:0000955	45.93	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.11	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	45.05	gold quality
primary visual cortex	UBERON:0002436	44.87	silver quality
Ammon’s horn	UBERON:0001954	44.43	gold quality
anterior cingulate cortex	UBERON:0009835	43.13	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	42.82	gold quality
cerebellar hemisphere	UBERON:0002245	42.76	gold quality
right frontal lobe	UBERON:0002810	42.54	gold quality
nucleus accumbens	UBERON:0001882	41.92	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.