LINC02413

Summary

LINC02413 (long intergenic non-protein coding RNA 2413, HGNC:53342) is a long non-coding RNA gene on chromosome 12q22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53342
Approved symbol	LINC02413
Name	long intergenic non-protein coding RNA 2413
Location	12q22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257345
Ensembl biotype	lncRNA
Entrez	105369906
RNAcentral	URS00005AF06D — lncRNA, 898 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000549914, ENST00000552353, ENST00000755877, ENST00000755878, ENST00000755879

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000549914 — 2 exons

Exon	Start	End
ENSE00002380484	93006094	93006257
ENSE00002381227	93003415	93003973

Expression profiles

Bgee: expression breadth ubiquitous, 101 present calls, max score 96.85.

Top tissues by expression

101 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	96.85	gold quality
bone marrow cell	CL:0002092	62.84	silver quality
tonsil	UBERON:0002372	62.04	gold quality
lymph node	UBERON:0000029	62.03	gold quality
leukocyte	CL:0000738	58.37	gold quality
blood	UBERON:0000178	57.79	gold quality
monocyte	CL:0000576	57.47	gold quality
granulocyte	CL:0000094	57.17	gold quality
spleen	UBERON:0002106	56.51	gold quality
calcaneal tendon	UBERON:0003701	56.10	gold quality
skeletal muscle tissue	UBERON:0001134	55.85	gold quality
minor salivary gland	UBERON:0001830	55.47	gold quality
vermiform appendix	UBERON:0001154	55.44	gold quality
saliva-secreting gland	UBERON:0001044	55.43	gold quality
sural nerve	UBERON:0015488	54.37	silver quality
bone marrow	UBERON:0002371	53.85	silver quality
urinary bladder	UBERON:0001255	53.26	gold quality
small intestine Peyer’s patch	UBERON:0003454	51.76	gold quality
small intestine	UBERON:0002108	51.69	gold quality
prefrontal cortex	UBERON:0000451	51.12	gold quality
placenta	UBERON:0001987	50.52	gold quality
duodenum	UBERON:0002114	50.20	gold quality
liver	UBERON:0002107	50.18	silver quality
gall bladder	UBERON:0002110	48.84	gold quality
adult mammalian kidney	UBERON:0000082	48.33	gold quality
kidney	UBERON:0002113	48.30	gold quality
muscle of leg	UBERON:0001383	48.26	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.13	gold quality
multicellular organism	UBERON:0000468	48.04	gold quality
right lobe of liver	UBERON:0001114	47.19	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.