LINC02414

Summary

LINC02414 (long intergenic non-protein coding RNA 2414, HGNC:53343) is a long non-coding RNA gene on chromosome 12q24.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53343
Approved symbol	LINC02414
Name	long intergenic non-protein coding RNA 2414
Location	12q24.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256424
Ensembl biotype	lncRNA
Entrez	105370085
RNAcentral	URS0000BC44DC — lncRNA, 1689 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000537280, ENST00000785805, ENST00000785806, ENST00000785807, ENST00000785808, ENST00000785809, ENST00000785810, ENST00000785811, ENST00000785812, ENST00000785813

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000537280 — 6 exons

Exon	Start	End
ENSE00002264604	131646659	131647529
ENSE00002320773	131648045	131648151
ENSE00003853166	131650082	131650479
ENSE00003860203	131639396	131639872
ENSE00003866996	131661744	131661823
ENSE00003872172	131641704	131641834

Expression profiles

Bgee: expression breadth broad, 53 present calls, max score 57.91.

Top tissues by expression

53 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	57.91	silver quality
blood	UBERON:0000178	50.98	silver quality
body of pancreas	UBERON:0001150	50.22	gold quality
prefrontal cortex	UBERON:0000451	49.82	silver quality
primary visual cortex	UBERON:0002436	49.18	silver quality
lymph node	UBERON:0000029	48.51	silver quality
endometrium	UBERON:0001295	47.73	silver quality
pancreas	UBERON:0001264	47.53	silver quality
superior frontal gyrus	UBERON:0002661	47.14	silver quality
islet of Langerhans	UBERON:0000006	46.97	silver quality
adrenal gland	UBERON:0002369	46.82	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	46.81	silver quality
ovary	UBERON:0000992	45.32	gold quality
left ovary	UBERON:0002119	45.08	gold quality
right ovary	UBERON:0002118	44.86	silver quality
frontal cortex	UBERON:0001870	43.70	silver quality
cerebellar hemisphere	UBERON:0002245	43.55	silver quality
skin of abdomen	UBERON:0001416	43.31	silver quality
right hemisphere of cerebellum	UBERON:0014890	43.01	silver quality
tibial nerve	UBERON:0001323	42.71	silver quality
small intestine Peyer’s patch	UBERON:0003454	42.61	gold quality
Ammon’s horn	UBERON:0001954	42.15	silver quality
cerebral cortex	UBERON:0000956	41.95	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.86	silver quality
spleen	UBERON:0002106	41.74	gold quality
substantia nigra	UBERON:0002038	41.18	gold quality
hypothalamus	UBERON:0001898	40.83	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	40.51	silver quality
amygdala	UBERON:0001876	40.39	silver quality
caudate nucleus	UBERON:0001873	40.33	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.