LINC02415

Summary

LINC02415 (long intergenic non-protein coding RNA 2415, HGNC:53344) is a long non-coding RNA gene on chromosome 12q24.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53344
Approved symbol	LINC02415
Name	long intergenic non-protein coding RNA 2415
Location	12q24.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248703
Ensembl biotype	lncRNA
Entrez	107161159
RNAcentral	URS0000A77141 — lncRNA, 1312 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 21 lncRNA

ENST00000508505, ENST00000666848, ENST00000811553, ENST00000811554, ENST00000811555, ENST00000811556, ENST00000811557, ENST00000811558, ENST00000811559, ENST00000811560, ENST00000811561, ENST00000811562, ENST00000811563, ENST00000811564, ENST00000811565, ENST00000811566, ENST00000811567, ENST00000811568, ENST00000811569, ENST00000811570, ENST00000811571

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508505 — 2 exons

Exon	Start	End
ENSE00002314420	131297585	131297972
ENSE00002343417	131296110	131297036

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 89.31.

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.31	gold quality
right testis	UBERON:0004534	65.37	gold quality
left testis	UBERON:0004533	64.24	gold quality
testis	UBERON:0000473	63.67	gold quality
ganglionic eminence	UBERON:0004023	57.62	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.92	gold quality
adult mammalian kidney	UBERON:0000082	54.46	gold quality
thyroid gland	UBERON:0002046	53.73	gold quality
ectocervix	UBERON:0012249	53.25	gold quality
left lobe of thyroid gland	UBERON:0001120	52.97	gold quality
skeletal muscle tissue	UBERON:0001134	52.59	silver quality
left ovary	UBERON:0002119	52.59	gold quality
islet of Langerhans	UBERON:0000006	52.40	gold quality
ovary	UBERON:0000992	52.12	gold quality
pancreas	UBERON:0001264	51.06	gold quality
right lobe of thyroid gland	UBERON:0001119	50.49	gold quality
blood	UBERON:0000178	50.43	silver quality
right ovary	UBERON:0002118	50.42	gold quality
lymph node	UBERON:0000029	50.10	gold quality
monocyte	CL:0000576	49.76	silver quality
bone marrow	UBERON:0002371	48.47	silver quality
superior frontal gyrus	UBERON:0002661	48.30	gold quality
fundus of stomach	UBERON:0001160	48.26	gold quality
endocervix	UBERON:0000458	48.07	gold quality
multicellular organism	UBERON:0000468	47.63	gold quality
prefrontal cortex	UBERON:0000451	47.51	silver quality
liver	UBERON:0002107	47.40	silver quality
gall bladder	UBERON:0002110	46.81	gold quality
muscle of leg	UBERON:0001383	46.72	silver quality
apex of heart	UBERON:0002098	46.44	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.