LINC02416

Summary

LINC02416 (long intergenic non-protein coding RNA 2416, HGNC:53345) is a long non-coding RNA gene on chromosome 12q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53345
Approved symbol	LINC02416
Name	long intergenic non-protein coding RNA 2416
Location	12q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257924
Ensembl biotype	lncRNA
Entrez	107984528
RNAcentral	URS00026A1C8D — lncRNA, 2352 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000550019, ENST00000718402, ENST00000718403, ENST00000718404

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550019 — 3 exons

Exon	Start	End
ENSE00002340164	47369658	47369935
ENSE00004034993	47353754	47353882
ENSE00004034994	47367292	47367424

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 71.88.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	71.88	gold quality
tonsil	UBERON:0002372	71.26	gold quality
bone marrow cell	CL:0002092	67.44	silver quality
lymph node	UBERON:0000029	65.30	gold quality
skeletal muscle tissue	UBERON:0001134	58.85	gold quality
bone marrow	UBERON:0002371	58.12	silver quality
vermiform appendix	UBERON:0001154	57.79	gold quality
liver	UBERON:0002107	57.55	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.19	gold quality
prefrontal cortex	UBERON:0000451	56.72	gold quality
blood	UBERON:0000178	55.94	gold quality
calcaneal tendon	UBERON:0003701	55.64	gold quality
endometrium	UBERON:0001295	54.55	gold quality
islet of Langerhans	UBERON:0000006	54.46	gold quality
granulocyte	CL:0000094	54.37	gold quality
fallopian tube	UBERON:0003889	53.88	gold quality
monocyte	CL:0000576	53.82	gold quality
stromal cell of endometrium	CL:0002255	53.82	silver quality
muscle of leg	UBERON:0001383	53.62	gold quality
gastrocnemius	UBERON:0001388	53.07	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.06	gold quality
corpus callosum	UBERON:0002336	53.02	gold quality
urinary bladder	UBERON:0001255	52.63	gold quality
hypothalamus	UBERON:0001898	52.37	gold quality
caudate nucleus	UBERON:0001873	52.05	gold quality
spleen	UBERON:0002106	51.96	gold quality
primary visual cortex	UBERON:0002436	51.77	gold quality
amygdala	UBERON:0001876	50.84	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.59	gold quality
adrenal tissue	UBERON:0018303	48.37	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.