LINC02417

Summary

LINC02417 (long intergenic non-protein coding RNA 2417, HGNC:53347) is a long non-coding RNA gene on chromosome 12p13.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53347
Approved symbol	LINC02417
Name	long intergenic non-protein coding RNA 2417
Location	12p13.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257048
Ensembl biotype	lncRNA
Entrez	101930162
RNAcentral	URS0000BC45C8 — lncRNA, 495 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000542449, ENST00000747695, ENST00000747696, ENST00000747697, ENST00000747698

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000542449 — 3 exons

Exon	Start	End
ENSE00002243575	3371285	3371346
ENSE00002257545	3367833	3368124
ENSE00002260889	3368265	3368425

Expression profiles

Bgee: expression breadth broad, 78 present calls, max score 76.94.

Top tissues by expression

78 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
body of pancreas	UBERON:0001150	76.94	gold quality
pancreas	UBERON:0001264	75.31	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.18	gold quality
metanephros cortex	UBERON:0010533	62.30	gold quality
adult mammalian kidney	UBERON:0000082	62.11	gold quality
kidney	UBERON:0002113	61.84	gold quality
cortex of kidney	UBERON:0001225	59.69	gold quality
prefrontal cortex	UBERON:0000451	56.96	gold quality
superior frontal gyrus	UBERON:0002661	55.65	gold quality
endocervix	UBERON:0000458	53.55	gold quality
blood	UBERON:0000178	52.95	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.83	gold quality
islet of Langerhans	UBERON:0000006	52.06	gold quality
liver	UBERON:0002107	52.04	silver quality
frontal cortex	UBERON:0001870	49.24	gold quality
saliva-secreting gland	UBERON:0001044	49.22	gold quality
primary visual cortex	UBERON:0002436	48.74	silver quality
monocyte	CL:0000576	48.68	silver quality
multicellular organism	UBERON:0000468	48.29	gold quality
nucleus accumbens	UBERON:0001882	47.51	gold quality
gastrocnemius	UBERON:0001388	47.39	silver quality
Brodmann (1909) area 9	UBERON:0013540	47.31	gold quality
cerebral cortex	UBERON:0000956	46.67	gold quality
cerebellum	UBERON:0002037	46.32	silver quality
cerebellar cortex	UBERON:0002129	46.25	silver quality
right lobe of thyroid gland	UBERON:0001119	46.13	gold quality
cerebellar hemisphere	UBERON:0002245	46.11	silver quality
brain	UBERON:0000955	45.75	gold quality
right lobe of liver	UBERON:0001114	45.63	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	45.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.