LINC02419

Summary

LINC02419 (long intergenic non-protein coding RNA 2419, HGNC:53349) is a long non-coding RNA gene on chromosome 12q24.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53349
Approved symbol	LINC02419
Name	long intergenic non-protein coding RNA 2419
Location	12q24.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256906
Ensembl biotype	lncRNA
Entrez	105370078
RNAcentral	URS0000BC452D — lncRNA, 703 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000535487, ENST00000848469

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000535487 — 2 exons

Exon	Start	End
ENSE00004277979	130070325	130071638
ENSE00004277981	130072287	130072689

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 80.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0367 / max 12.1793, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
128712	0.0367	9

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	80.64	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.32	gold quality
right testis	UBERON:0004534	69.80	gold quality
left testis	UBERON:0004533	69.63	gold quality
tibialis anterior	UBERON:0001385	68.29	silver quality
testis	UBERON:0000473	67.37	gold quality
deltoid	UBERON:0001476	58.32	silver quality
pancreatic ductal cell	CL:0002079	57.28	silver quality
ileal mucosa	UBERON:0000331	56.77	gold quality
monocyte	CL:0000576	55.96	gold quality
ganglionic eminence	UBERON:0004023	55.38	silver quality
islet of Langerhans	UBERON:0000006	54.62	silver quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
epithelial cell of pancreas	CL:0000083	54.32	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
muscle of leg	UBERON:0001383	53.15	gold quality
gastrocnemius	UBERON:0001388	50.66	gold quality
myocardium	UBERON:0002349	50.25	gold quality
prefrontal cortex	UBERON:0000451	49.03	gold quality
anterior cingulate cortex	UBERON:0009835	47.73	gold quality
quadriceps femoris	UBERON:0001377	47.56	gold quality
calcaneal tendon	UBERON:0003701	47.54	silver quality
gall bladder	UBERON:0002110	47.06	gold quality
nasal cavity epithelium	UBERON:0005384	47.03	gold quality
upper lobe of lung	UBERON:0008948	46.44	silver quality
lower lobe of lung	UBERON:0008949	46.38	silver quality
adult organism	UBERON:0007023	46.36	silver quality
smooth muscle tissue	UBERON:0001135	45.52	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.