LINC02420

Summary

LINC02420 (long intergenic non-protein coding RNA 2420, HGNC:53350) is a long non-coding RNA gene on chromosome 12q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53350
Approved symbol	LINC02420
Name	long intergenic non-protein coding RNA 2420
Location	12q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256172
Ensembl biotype	lncRNA
Entrez	102724433
RNAcentral	URS0000578DCB — lncRNA, 741 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000543387, ENST00000830464, ENST00000830465, ENST00000830466, ENST00000830467

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000543387 — 2 exons

Exon	Start	End
ENSE00004244938	67440996	67441472
ENSE00004244939	67442294	67442591

Expression profiles

Bgee: expression breadth broad, 26 present calls, max score 79.45.

Top tissues by expression

37 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	79.45	silver quality
subcutaneous adipose tissue	UBERON:0002190	77.82	silver quality
prostate gland	UBERON:0002367	76.91	gold quality
skeletal muscle tissue	UBERON:0001134	74.93	silver quality
kidney	UBERON:0002113	73.31	silver quality
thymus	UBERON:0002370	73.08	silver quality
spleen	UBERON:0002106	72.91	silver quality
spinal cord	UBERON:0002240	71.21	silver quality
liver	UBERON:0002107	70.66	silver quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
monocyte	CL:0000576	57.28	gold quality
right testis	UBERON:0004534	53.70	gold quality
pancreas	UBERON:0001264	52.95	gold quality
frontal cortex	UBERON:0001870	52.93	silver quality
anterior cingulate cortex	UBERON:0009835	52.69	silver quality
islet of Langerhans	UBERON:0000006	51.79	gold quality
testis	UBERON:0000473	51.54	gold quality
left testis	UBERON:0004533	50.93	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	48.92	silver quality
prefrontal cortex	UBERON:0000451	48.38	gold quality
heart	UBERON:0000948	47.81	gold quality
muscle of leg	UBERON:0001383	45.34	silver quality
gastrocnemius	UBERON:0001388	44.56	silver quality
thyroid gland	UBERON:0002046	43.63	silver quality
tibial artery	UBERON:0007610	43.63	silver quality
right atrium auricular region	UBERON:0006631	43.17	silver quality
body of stomach	UBERON:0001161	42.04	silver quality
muscle layer of sigmoid colon	UBERON:0035805	41.68	gold quality
skin of leg	UBERON:0001511	41.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.