LINC02423

Summary

LINC02423 (long intergenic non-protein coding RNA 2423, HGNC:53353) is a long non-coding RNA gene on chromosome 12q24.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53353
Approved symbol	LINC02423
Name	long intergenic non-protein coding RNA 2423
Location	12q24.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256750
Ensembl biotype	lncRNA
Entrez	105370014
RNAcentral	URS00003884B6 — lncRNA, 460 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000536572, ENST00000542577, ENST00000655557, ENST00000721265

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000536572 — 2 exons

Exon	Start	End
ENSE00002207622	118758805	118759031
ENSE00002308732	118761592	118761657

Expression profiles

Bgee: expression breadth broad, 44 present calls, max score 93.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0164 / max 13.9836, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
133558	0.0164	4

Top tissues by expression

44 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.57	gold quality
left testis	UBERON:0004533	79.20	gold quality
testis	UBERON:0000473	78.69	gold quality
right testis	UBERON:0004534	77.98	gold quality
multicellular organism	UBERON:0000468	68.66	gold quality
cortical plate	UBERON:0005343	58.88	gold quality
monocyte	CL:0000576	58.31	gold quality
amygdala	UBERON:0001876	57.89	gold quality
blood	UBERON:0000178	56.43	gold quality
gastrocnemius	UBERON:0001388	56.43	gold quality
heart left ventricle	UBERON:0002084	53.00	gold quality
thoracic aorta	UBERON:0001515	52.96	gold quality
adipose tissue	UBERON:0001013	50.46	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	49.73	gold quality
ectocervix	UBERON:0012249	48.12	gold quality
left coronary artery	UBERON:0001626	48.02	gold quality
prostate gland	UBERON:0002367	47.57	gold quality
anterior cingulate cortex	UBERON:0009835	47.01	gold quality
muscle layer of sigmoid colon	UBERON:0035805	46.89	gold quality
vagina	UBERON:0000996	46.23	gold quality
right ovary	UBERON:0002118	46.08	gold quality
tibial artery	UBERON:0007610	45.97	silver quality
metanephros cortex	UBERON:0010533	45.90	gold quality
substantia nigra	UBERON:0002038	45.75	gold quality
esophagus mucosa	UBERON:0002469	45.73	gold quality
thyroid gland	UBERON:0002046	45.42	gold quality
skin of leg	UBERON:0001511	45.32	gold quality
skin of abdomen	UBERON:0001416	45.20	gold quality
frontal cortex	UBERON:0001870	45.06	gold quality
right frontal lobe	UBERON:0002810	44.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.