LINC02424

Summary

LINC02424 (long intergenic non-protein coding RNA 2424, HGNC:53354) is a long non-coding RNA gene on chromosome 12q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53354
Approved symbol	LINC02424
Name	long intergenic non-protein coding RNA 2424
Location	12q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258220
Ensembl biotype	lncRNA
Entrez	105369860
RNAcentral	URS00008C1E23 — lncRNA, 1280 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000548512, ENST00000815309, ENST00000815310, ENST00000815311

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548512 — 2 exons

Exon	Start	End
ENSE00004217155	78359180	78359746
ENSE00004217157	78326668	78327376

Expression profiles

Bgee: expression breadth broad, 30 present calls, max score 98.51.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0054 / max 5.4130, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
132241	0.0054	2

Top tissues by expression

171 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	98.51	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.52	silver quality
right testis	UBERON:0004534	70.44	gold quality
left testis	UBERON:0004533	69.12	gold quality
testis	UBERON:0000473	67.52	gold quality
cortical plate	UBERON:0005343	63.05	gold quality
buccal mucosa cell	CL:0002336	60.87	silver quality
ganglionic eminence	UBERON:0004023	58.64	gold quality
monocyte	CL:0000576	51.32	silver quality
gastrocnemius	UBERON:0001388	48.20	gold quality
cauda epididymis	UBERON:0004360	46.82	silver quality
upper lobe of lung	UBERON:0008948	46.10	silver quality
lower lobe of lung	UBERON:0008949	45.91	silver quality
right frontal lobe	UBERON:0002810	44.67	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.64	silver quality
anatomical system	UBERON:0000467	44.02	gold quality
right ovary	UBERON:0002118	43.94	gold quality
material anatomical entity	UBERON:0000465	43.84	gold quality
multicellular organism	UBERON:0000468	43.69	gold quality
tibial artery	UBERON:0007610	43.65	silver quality
tibial nerve	UBERON:0001323	43.42	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
adrenal gland	UBERON:0002369	43.04	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
cerebellar hemisphere	UBERON:0002245	42.27	silver quality
anterior cingulate cortex	UBERON:0009835	42.24	gold quality
blood	UBERON:0000178	42.04	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
left lobe of thyroid gland	UBERON:0001120	41.96	silver quality
lung	UBERON:0002048	41.96	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.