LINC02425

Summary

LINC02425 (long intergenic non-protein coding RNA 2425, HGNC:53356) is a long non-coding RNA gene on chromosome 12q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53356
Approved symbol	LINC02425
Name	long intergenic non-protein coding RNA 2425
Location	12q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000256259
Ensembl biotype	lncRNA
Entrez	105369810
RNAcentral	URS00001D7305 — lncRNA, 376 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000536217, ENST00000763732, ENST00000763733, ENST00000763734, ENST00000763735

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000536217 — 3 exons

Exon	Start	End
ENSE00002218057	66027725	66027882
ENSE00002284244	66028588	66028699
ENSE00002314832	66030961	66031066

Expression profiles

Bgee: expression breadth broad, 40 present calls, max score 96.14.

Top tissues by expression

40 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	96.14	silver quality
lymph node	UBERON:0000029	63.03	gold quality
monocyte	CL:0000576	59.89	gold quality
blood	UBERON:0000178	56.75	gold quality
gastrocnemius	UBERON:0001388	53.27	gold quality
calcaneal tendon	UBERON:0003701	52.37	silver quality
ascending aorta	UBERON:0001496	51.22	gold quality
fallopian tube	UBERON:0003889	49.74	gold quality
spleen	UBERON:0002106	47.21	gold quality
descending thoracic aorta	UBERON:0002345	47.09	gold quality
transverse colon	UBERON:0001157	46.32	gold quality
muscle layer of sigmoid colon	UBERON:0035805	45.39	gold quality
esophagus mucosa	UBERON:0002469	45.24	gold quality
tibial artery	UBERON:0007610	45.18	silver quality
left lobe of thyroid gland	UBERON:0001120	45.13	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.13	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.55	silver quality
omental fat pad	UBERON:0010414	44.27	gold quality
left coronary artery	UBERON:0001626	44.22	gold quality
skin of abdomen	UBERON:0001416	43.79	gold quality
body of stomach	UBERON:0001161	43.54	silver quality
thyroid gland	UBERON:0002046	43.30	gold quality
skin of leg	UBERON:0001511	42.98	silver quality
prostate gland	UBERON:0002367	42.92	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.82	gold quality
left adrenal gland cortex	UBERON:0035825	41.82	silver quality
left ovary	UBERON:0002119	41.80	silver quality
vagina	UBERON:0000996	41.79	silver quality
right testis	UBERON:0004534	41.12	gold quality
right ovary	UBERON:0002118	40.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.