LINC02426

Summary

LINC02426 (long intergenic non-protein coding RNA 2426, HGNC:53357) is a long non-coding RNA gene on chromosome 12q21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53357
Approved symbol	LINC02426
Name	long intergenic non-protein coding RNA 2426
Location	12q21.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257747
Ensembl biotype	lncRNA
Entrez	101928449
RNAcentral	URS000043B54C — lncRNA, 1372 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000550506, ENST00000660121

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550506 — 3 exons

Exon	Start	End
ENSE00002329292	81953719	81954155
ENSE00002397915	81954248	81954480
ENSE00003864358	81992432	81993136

Expression profiles

Bgee: expression breadth tissue_specific, 7 present calls, max score 51.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2007 / max 51.6912, expressed in 36 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
127140	0.2007	36

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	51.94	silver quality
upper lobe of lung	UBERON:0008948	51.28	silver quality
lower lobe of lung	UBERON:0008949	51.13	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.61	silver quality
lung	UBERON:0002048	43.54	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.12	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
heart	UBERON:0000948	41.49	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality
amniotic fluid	UBERON:0000173	40.69	gold quality
nasal cavity mucosa	UBERON:0001826	40.63	gold quality
jejunal mucosa	UBERON:0000399	40.59	gold quality
endometrium	UBERON:0001295	40.57	gold quality
biceps brachii	UBERON:0001507	40.57	gold quality
adipose tissue	UBERON:0001013	40.50	gold quality
adrenal gland	UBERON:0002369	40.46	gold quality
epithelium of nasopharynx	UBERON:0001951	40.45	gold quality
myocardium	UBERON:0002349	40.45	gold quality
gingival epithelium	UBERON:0001949	40.43	gold quality
kidney	UBERON:0002113	40.38	gold quality
adipose tissue of abdominal region	UBERON:0007808	40.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.