LINC02428

Summary

LINC02428 (long intergenic non-protein coding RNA 2428, HGNC:53359) is a long non-coding RNA gene on chromosome 4q24.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53359
Approved symbol	LINC02428
Name	long intergenic non-protein coding RNA 2428
Location	4q24
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248740
Ensembl biotype	lncRNA
Entrez	101929448
RNAcentral	URS00005E6F3D — lncRNA, 417 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000508099, ENST00000510200, ENST00000513793, ENST00000656104, ENST00000656681, ENST00000657481, ENST00000664815, ENST00000666142, ENST00000668077, ENST00000669559, ENST00000687316, ENST00000701460, ENST00000802495, ENST00000802496, ENST00000802497, ENST00000802498, ENST00000802499, ENST00000802500, ENST00000802501, ENST00000802502, ENST00000802503, ENST00000802504, ENST00000802505, ENST00000802506

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508099 — 4 exons

Exon	Start	End
ENSE00002027306	103439625	103439741
ENSE00002051405	103377003	103377175
ENSE00002055191	103436935	103437046
ENSE00002076663	103437718	103437842

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 89.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1973 / max 82.3210, expressed in 16 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
49112	0.1148	7
49111	0.0824	14

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	89.99	gold quality
right lobe of liver	UBERON:0001114	89.30	gold quality
muscle tissue	UBERON:0002385	78.60	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.01	gold quality
cortex of kidney	UBERON:0001225	77.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.24	gold quality
colonic epithelium	UBERON:0000397	60.51	silver quality
ganglionic eminence	UBERON:0004023	60.48	gold quality
tonsil	UBERON:0002372	57.94	silver quality
urinary bladder	UBERON:0001255	57.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.41	gold quality
calcaneal tendon	UBERON:0003701	55.56	gold quality
stromal cell of endometrium	CL:0002255	55.08	gold quality
placenta	UBERON:0001987	55.05	gold quality
monocyte	CL:0000576	54.95	gold quality
blood	UBERON:0000178	54.86	gold quality
minor salivary gland	UBERON:0001830	53.49	gold quality
saliva-secreting gland	UBERON:0001044	53.38	gold quality
adenohypophysis	UBERON:0002196	53.34	gold quality
endometrium	UBERON:0001295	53.14	silver quality
pancreas	UBERON:0001264	51.84	gold quality
kidney	UBERON:0002113	51.28	gold quality
muscle of leg	UBERON:0001383	51.01	gold quality
cerebellum	UBERON:0002037	50.59	silver quality
cerebellar cortex	UBERON:0002129	50.21	silver quality
gastrocnemius	UBERON:0001388	49.87	gold quality
body of pancreas	UBERON:0001150	49.32	gold quality
corpus callosum	UBERON:0002336	49.10	gold quality
multicellular organism	UBERON:0000468	48.80	gold quality
prefrontal cortex	UBERON:0000451	48.72	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.