LINC02433

Summary

LINC02433 (long intergenic non-protein coding RNA 2433, HGNC:27959) is a long non-coding RNA gene on chromosome 4q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27959
Approved symbol	LINC02433
Name	long intergenic non-protein coding RNA 2433
Location	4q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234111
Ensembl biotype	lncRNA
Entrez	340017
RNAcentral	URS000075C27A — lncRNA, 1492 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000455598, ENST00000507108, ENST00000509450, ENST00000743291, ENST00000743292, ENST00000743293

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455598 — 2 exons

Exon	Start	End
ENSE00004081529	157572501	157572725
ENSE00004081533	157574898	157575824

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 86.05.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0266 / max 8.7237, expressed in 17 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50257	0.0266	17

Top tissues by expression

186 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.05	gold quality
prefrontal cortex	UBERON:0000451	62.53	gold quality
anterior cingulate cortex	UBERON:0009835	59.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.44	gold quality
right frontal lobe	UBERON:0002810	58.50	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.32	gold quality
neocortex	UBERON:0001950	57.05	gold quality
frontal cortex	UBERON:0001870	56.99	gold quality
substantia nigra	UBERON:0002038	55.88	gold quality
cerebral cortex	UBERON:0000956	54.04	gold quality
midbrain	UBERON:0001891	53.96	gold quality
monocyte	CL:0000576	53.83	gold quality
stromal cell of endometrium	CL:0002255	53.31	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.60	gold quality
gall bladder	UBERON:0002110	51.07	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.96	gold quality
forebrain	UBERON:0001890	50.66	gold quality
brain	UBERON:0000955	50.52	gold quality
spinal cord	UBERON:0002240	49.08	gold quality
right hemisphere of cerebellum	UBERON:0014890	49.04	gold quality
muscle of leg	UBERON:0001383	48.36	gold quality
lower lobe of lung	UBERON:0008949	48.07	silver quality
gastrocnemius	UBERON:0001388	47.76	gold quality
cerebellar hemisphere	UBERON:0002245	47.35	gold quality
hypothalamus	UBERON:0001898	47.07	gold quality
right lobe of liver	UBERON:0001114	47.05	silver quality
ectocervix	UBERON:0012249	46.84	gold quality
buccal mucosa cell	CL:0002336	45.60	gold quality
islet of Langerhans	UBERON:0000006	45.56	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.48	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.