LINC02436

Summary

LINC02436 (long intergenic non-protein coding RNA 2436, HGNC:53368) is a long non-coding RNA gene on chromosome 4q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53368
Approved symbol	LINC02436
Name	long intergenic non-protein coding RNA 2436
Location	4q35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250754
Ensembl biotype	lncRNA
Entrez	101928877
RNAcentral	URS00022AE6F3 — lncRNA, 2205 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 99 — 99 lncRNA

ENST00000506338, ENST00000509017, ENST00000511746, ENST00000652785, ENST00000652921, ENST00000653071, ENST00000653526, ENST00000653662, ENST00000653833, ENST00000653945, ENST00000654241, ENST00000654591, ENST00000654708, ENST00000655167, ENST00000655243, ENST00000655383, ENST00000656006, ENST00000656297, ENST00000656493, ENST00000656521, ENST00000656669, ENST00000656847, ENST00000657018, ENST00000657731, ENST00000658229, ENST00000658238, ENST00000658467, ENST00000658673, ENST00000659379, ENST00000659579, ENST00000659637, ENST00000659890, ENST00000661043, ENST00000661154, ENST00000661234, ENST00000661260, ENST00000662468, ENST00000662812, ENST00000663336, ENST00000663431, ENST00000663811, ENST00000664058, ENST00000664442, ENST00000664605, ENST00000664714, ENST00000665213, ENST00000665221, ENST00000665415, ENST00000666450, ENST00000666765, ENST00000667020, ENST00000667441, ENST00000667481, ENST00000668759, ENST00000668769, ENST00000668855, ENST00000669078, ENST00000669292, ENST00000669852, ENST00000670274, ENST00000671007, ENST00000671123, ENST00000671285, ENST00000826089, ENST00000826090, ENST00000826091, ENST00000826092, ENST00000826093, ENST00000826094, ENST00000826095, ENST00000826096, ENST00000826097, ENST00000826098, ENST00000826099, ENST00000826100, ENST00000826101, ENST00000826102, ENST00000826103, ENST00000826104, ENST00000826105, ENST00000826106, ENST00000826107, ENST00000826108, ENST00000826109, ENST00000826110, ENST00000826111, ENST00000826112, ENST00000826113, ENST00000826114, ENST00000826115, ENST00000826116, ENST00000826117, ENST00000826118, ENST00000826119, ENST00000826120, ENST00000826121, ENST00000826122, ENST00000826123, ENST00000826124

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506338 — 6 exons

Exon	Start	End
ENSE00002062427	185053105	185053188
ENSE00002086591	185054979	185055341
ENSE00003869483	185071568	185071947
ENSE00003878323	185069930	185070030
ENSE00004236663	185062457	185062816
ENSE00004236685	185051870	185051936

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 82.69.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0164 / max 16.6901, expressed in 3 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50871	0.0104	3
50870	0.0031	2
50872	0.0029	2

Top tissues by expression

195 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.69	gold quality
left testis	UBERON:0004533	79.22	gold quality
right testis	UBERON:0004534	78.69	gold quality
sural nerve	UBERON:0015488	77.24	gold quality
testis	UBERON:0000473	76.72	gold quality
ganglionic eminence	UBERON:0004023	57.20	gold quality
mammary duct	UBERON:0001765	54.87	gold quality
monocyte	CL:0000576	54.84	gold quality
gall bladder	UBERON:0002110	53.68	gold quality
calcaneal tendon	UBERON:0003701	52.65	silver quality
lower lobe of lung	UBERON:0008949	52.16	silver quality
hindlimb stylopod muscle	UBERON:0004252	51.68	gold quality
adult organism	UBERON:0007023	49.50	gold quality
left adrenal gland cortex	UBERON:0035825	49.41	gold quality
muscle of leg	UBERON:0001383	48.83	gold quality
buccal mucosa cell	CL:0002336	48.47	gold quality
prefrontal cortex	UBERON:0000451	47.59	gold quality
islet of Langerhans	UBERON:0000006	47.58	gold quality
gastrocnemius	UBERON:0001388	47.26	gold quality
smooth muscle tissue	UBERON:0001135	47.11	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.91	gold quality
lymph node	UBERON:0000029	46.75	silver quality
vermiform appendix	UBERON:0001154	46.50	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.50	silver quality
right lobe of liver	UBERON:0001114	46.35	silver quality
upper leg skin	UBERON:0004262	45.95	silver quality
tibial nerve	UBERON:0001323	45.79	gold quality
adult mammalian kidney	UBERON:0000082	45.51	gold quality
tibial artery	UBERON:0007610	45.50	gold quality
anatomical system	UBERON:0000467	45.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.25

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.