LINC02439

Summary

LINC02439 (long intergenic non-protein coding RNA 2439, HGNC:53371) is a long non-coding RNA gene on chromosome 12q24.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53371
Approved symbol	LINC02439
Name	long intergenic non-protein coding RNA 2439
Location	12q24.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255814
Ensembl biotype	lncRNA
Entrez	105370016
RNAcentral	URS0000A7699F — lncRNA, 462 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000538783, ENST00000664005

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000538783 — 3 exons

Exon	Start	End
ENSE00002203739	118818804	118819021
ENSE00002216879	118833387	118833536
ENSE00002230277	118832962	118833043

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 81.76.

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.76	silver quality
small intestine	UBERON:0002108	81.58	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.26	gold quality
left testis	UBERON:0004533	62.87	gold quality
testis	UBERON:0000473	62.68	gold quality
right testis	UBERON:0004534	62.09	gold quality
monocyte	CL:0000576	59.73	gold quality
multicellular organism	UBERON:0000468	59.41	gold quality
gastrocnemius	UBERON:0001388	55.72	gold quality
blood	UBERON:0000178	54.34	gold quality
prefrontal cortex	UBERON:0000451	53.35	gold quality
frontal cortex	UBERON:0001870	51.37	gold quality
heart left ventricle	UBERON:0002084	51.25	gold quality
esophagus mucosa	UBERON:0002469	46.65	gold quality
thoracic aorta	UBERON:0001515	46.58	gold quality
body of pancreas	UBERON:0001150	43.63	silver quality
right adrenal gland	UBERON:0001233	42.78	gold quality
thyroid gland	UBERON:0002046	42.69	silver quality
Ammon’s horn	UBERON:0001954	42.68	gold quality
anterior cingulate cortex	UBERON:0009835	42.59	gold quality
spleen	UBERON:0002106	42.56	silver quality
nucleus accumbens	UBERON:0001882	42.47	silver quality
subcutaneous adipose tissue	UBERON:0002190	42.21	silver quality
lung	UBERON:0002048	41.81	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	41.29	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	40.89	gold quality
Brodmann (1909) area 9	UBERON:0013540	40.48	silver quality
omental fat pad	UBERON:0010414	38.17	silver quality
muscle layer of sigmoid colon	UBERON:0035805	37.66	silver quality
transverse colon	UBERON:0001157	36.86	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.