LINC02440

Summary

LINC02440 (long intergenic non-protein coding RNA 2440, HGNC:53372) is a long non-coding RNA gene on chromosome 12q24.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53372
Approved symbol	LINC02440
Name	long intergenic non-protein coding RNA 2440
Location	12q24.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255618
Ensembl biotype	lncRNA
Entrez	105370015
RNAcentral	URS00026A23D0 — lncRNA, 557 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000545276, ENST00000668907, ENST00000798076, ENST00000798077, ENST00000798078, ENST00000798079, ENST00000798080

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000545276 — 4 exons

Exon	Start	End
ENSE00002211652	118773032	118773302
ENSE00002245457	118773611	118773775
ENSE00002282636	118774486	118774518
ENSE00002310050	118774927	118775137

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 90.57.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.57	gold quality
putamen	UBERON:0001874	84.20	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.64	gold quality
nucleus accumbens	UBERON:0001882	83.37	gold quality
caudate nucleus	UBERON:0001873	81.85	gold quality
cortical plate	UBERON:0005343	79.23	gold quality
Ammon’s horn	UBERON:0001954	78.47	gold quality
ganglionic eminence	UBERON:0004023	76.75	gold quality
anterior cingulate cortex	UBERON:0009835	76.08	gold quality
amygdala	UBERON:0001876	75.88	gold quality
temporal lobe	UBERON:0001871	75.61	gold quality
hypothalamus	UBERON:0001898	74.75	gold quality
substantia nigra	UBERON:0002038	73.71	gold quality
cerebral cortex	UBERON:0000956	73.30	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	72.52	gold quality
brain	UBERON:0000955	72.07	gold quality
prefrontal cortex	UBERON:0000451	72.00	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.62	gold quality
ventricular zone	UBERON:0003053	71.31	gold quality
frontal cortex	UBERON:0001870	71.09	gold quality
superior frontal gyrus	UBERON:0002661	71.09	gold quality
primary visual cortex	UBERON:0002436	70.43	gold quality
right frontal lobe	UBERON:0002810	69.80	gold quality
sural nerve	UBERON:0015488	66.75	gold quality
multicellular organism	UBERON:0000468	62.62	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	61.47	gold quality
duodenum	UBERON:0002114	57.95	gold quality
body of uterus	UBERON:0009853	54.55	gold quality
endometrium	UBERON:0001295	53.49	gold quality
right adrenal gland	UBERON:0001233	53.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.