LINC02441

Summary

LINC02441 (long intergenic non-protein coding RNA 2441, HGNC:53373) is a long non-coding RNA gene on chromosome 12q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53373
Approved symbol	LINC02441
Name	long intergenic non-protein coding RNA 2441
Location	12q24.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	CRAT8
Ensembl gene	ENSG00000256643
Ensembl biotype	lncRNA
Entrez	105370070
RNAcentral	URS000040D8C6 — lncRNA, 552 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000543651, ENST00000735938, ENST00000735939

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000543651 — 3 exons

Exon	Start	End
ENSE00002308397	128025859	128026199
ENSE00004068708	128026991	128027168
ENSE00004068712	128022695	128023822

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 91.70.

Top tissues by expression

57 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.70	silver quality
rectum	UBERON:0001052	87.45	gold quality
mucosa of transverse colon	UBERON:0004991	83.67	gold quality
transverse colon	UBERON:0001157	79.01	gold quality
colon	UBERON:0001155	74.63	gold quality
intestine	UBERON:0000160	71.65	gold quality
gall bladder	UBERON:0002110	68.90	gold quality
small intestine Peyer’s patch	UBERON:0003454	64.28	gold quality
small intestine	UBERON:0002108	64.27	gold quality
vermiform appendix	UBERON:0001154	64.15	gold quality
colonic epithelium	UBERON:0000397	62.07	silver quality
islet of Langerhans	UBERON:0000006	58.50	gold quality
muscle layer of sigmoid colon	UBERON:0035805	57.97	gold quality
smooth muscle tissue	UBERON:0001135	57.14	gold quality
prefrontal cortex	UBERON:0000451	55.60	gold quality
liver	UBERON:0002107	54.72	gold quality
primary visual cortex	UBERON:0002436	51.90	gold quality
monocyte	CL:0000576	51.37	silver quality
blood	UBERON:0000178	50.02	silver quality
muscle of leg	UBERON:0001383	49.21	gold quality
kidney	UBERON:0002113	48.10	gold quality
right lobe of liver	UBERON:0001114	45.88	silver quality
adult mammalian kidney	UBERON:0000082	45.05	gold quality
gastrocnemius	UBERON:0001388	44.74	silver quality
stomach	UBERON:0000945	44.36	gold quality
tibial nerve	UBERON:0001323	44.03	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.72	gold quality
thoracic aorta	UBERON:0001515	43.62	silver quality
body of stomach	UBERON:0001161	43.60	silver quality
frontal cortex	UBERON:0001870	43.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.