LINC02460

Summary

LINC02460 (long intergenic non-protein coding RNA 2460, HGNC:53396) is a long non-coding RNA gene on chromosome 12q24.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53396
Approved symbol	LINC02460
Name	long intergenic non-protein coding RNA 2460
Location	12q24.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255714
Ensembl biotype	lncRNA
Entrez	105370013
RNAcentral	URS00026A25D7 — lncRNA, 3230 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000543558

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000543558 — 3 exons

Exon	Start	End
ENSE00002209250	118645315	118645529
ENSE00002251756	118647875	118647954
ENSE00002323204	118648484	118648724

Expression profiles

Bgee: expression breadth broad, 21 present calls, max score 93.55.

Top tissues by expression

21 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.55	gold quality
liver	UBERON:0002107	69.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.11	gold quality
prefrontal cortex	UBERON:0000451	60.01	gold quality
blood	UBERON:0000178	56.77	gold quality
testis	UBERON:0000473	53.96	gold quality
right testis	UBERON:0004534	53.78	gold quality
gastrocnemius	UBERON:0001388	53.75	gold quality
left testis	UBERON:0004533	53.43	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.61	silver quality
adult mammalian kidney	UBERON:0000082	47.22	silver quality
putamen	UBERON:0001874	46.90	gold quality
vagina	UBERON:0000996	45.72	gold quality
Ammon’s horn	UBERON:0001954	45.64	gold quality
body of stomach	UBERON:0001161	44.11	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	41.77	silver quality
right frontal lobe	UBERON:0002810	41.58	gold quality
prostate gland	UBERON:0002367	39.47	gold quality
esophagus mucosa	UBERON:0002469	37.44	silver quality
left lobe of thyroid gland	UBERON:0001120	33.99	silver quality
tibial nerve	UBERON:0001323	27.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.