LINC02461

Summary

LINC02461 (long intergenic non-protein coding RNA 2461, HGNC:53398) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53398
Approved symbol	LINC02461
Name	long intergenic non-protein coding RNA 2461
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258331
Ensembl biotype	lncRNA
Entrez	105369740
RNAcentral	URS000045AD0A — lncRNA, 836 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000553211

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553211 — 4 exons

Exon	Start	End
ENSE00002356973	43155315	43155865
ENSE00002370238	43162968	43163110
ENSE00002377697	43160879	43160968
ENSE00002389110	43159393	43159444

Expression profiles

Bgee: expression breadth broad, 76 present calls, max score 79.33.

Top tissues by expression

76 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.33	silver quality
calcaneal tendon	UBERON:0003701	66.03	gold quality
spleen	UBERON:0002106	65.02	gold quality
gall bladder	UBERON:0002110	61.15	gold quality
stromal cell of endometrium	CL:0002255	55.60	gold quality
monocyte	CL:0000576	53.58	silver quality
endometrium	UBERON:0001295	52.90	gold quality
smooth muscle tissue	UBERON:0001135	52.41	gold quality
lymph node	UBERON:0000029	52.00	gold quality
myometrium	UBERON:0001296	51.94	gold quality
kidney	UBERON:0002113	51.68	gold quality
metanephros cortex	UBERON:0010533	51.54	gold quality
tibial nerve	UBERON:0001323	50.97	gold quality
vermiform appendix	UBERON:0001154	50.78	gold quality
body of pancreas	UBERON:0001150	50.53	gold quality
urinary bladder	UBERON:0001255	50.41	gold quality
prefrontal cortex	UBERON:0000451	49.02	gold quality
islet of Langerhans	UBERON:0000006	48.99	gold quality
left coronary artery	UBERON:0001626	48.76	gold quality
left ovary	UBERON:0002119	48.70	gold quality
bone marrow	UBERON:0002371	48.46	silver quality
pituitary gland	UBERON:0000007	47.94	gold quality
gastrocnemius	UBERON:0001388	47.79	gold quality
blood	UBERON:0000178	47.18	silver quality
upper lobe of left lung	UBERON:0008952	46.44	gold quality
ovary	UBERON:0000992	46.42	gold quality
saliva-secreting gland	UBERON:0001044	46.10	gold quality
tibial artery	UBERON:0007610	46.00	gold quality
skin of leg	UBERON:0001511	45.94	gold quality
placenta	UBERON:0001987	45.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.