LINC02464

Summary

LINC02464 (long intergenic non-protein coding RNA 2464, HGNC:53401) is a long non-coding RNA gene on chromosome 12q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53401
Approved symbol	LINC02464
Name	long intergenic non-protein coding RNA 2464
Location	12q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257677
Ensembl biotype	lncRNA
Entrez	105369854
RNAcentral	URS0000EECE28 — lncRNA, 1059 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000552060, ENST00000837066, ENST00000837067, ENST00000837068, ENST00000837069, ENST00000837070, ENST00000837071, ENST00000837072, ENST00000837073

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000552060 — 5 exons

Exon	Start	End
ENSE00002329815	77228536	77228831
ENSE00002338089	77219603	77219812
ENSE00003862324	77312150	77312230
ENSE00003866057	77316930	77317234
ENSE00003872228	77228916	77229082

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 92.05.

Top tissues by expression

48 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	92.05	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.82	gold quality
monocyte	CL:0000576	59.32	gold quality
prefrontal cortex	UBERON:0000451	51.76	gold quality
testis	UBERON:0000473	51.00	gold quality
left testis	UBERON:0004533	50.82	gold quality
right testis	UBERON:0004534	50.52	gold quality
cortex of kidney	UBERON:0001225	47.09	silver quality
frontal cortex	UBERON:0001870	46.65	gold quality
multicellular organism	UBERON:0000468	45.66	gold quality
placenta	UBERON:0001987	45.62	silver quality
vermiform appendix	UBERON:0001154	45.31	silver quality
superior frontal gyrus	UBERON:0002661	44.75	silver quality
esophagus mucosa	UBERON:0002469	44.72	silver quality
putamen	UBERON:0001874	43.51	gold quality
prostate gland	UBERON:0002367	43.45	silver quality
ascending aorta	UBERON:0001496	42.93	silver quality
blood	UBERON:0000178	42.86	silver quality
gall bladder	UBERON:0002110	42.85	silver quality
ovary	UBERON:0000992	42.67	silver quality
brain	UBERON:0000955	42.43	gold quality
right ovary	UBERON:0002118	42.37	silver quality
adipose tissue	UBERON:0001013	42.33	silver quality
nucleus accumbens	UBERON:0001882	42.02	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.91	silver quality
right atrium auricular region	UBERON:0006631	41.86	gold quality
tibial nerve	UBERON:0001323	41.73	gold quality
left ovary	UBERON:0002119	41.70	silver quality
anterior cingulate cortex	UBERON:0009835	41.70	silver quality
Ammon’s horn	UBERON:0001954	41.63	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.