LINC02465

Summary

LINC02465 (long intergenic non-protein coding RNA 2465, HGNC:53403) is a long non-coding RNA gene on chromosome 4q28.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53403
Approved symbol	LINC02465
Name	long intergenic non-protein coding RNA 2465
Location	4q28.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249618
Ensembl biotype	lncRNA
Entrez	107986313
RNAcentral	URS0000CCDFBC — lncRNA, 1843 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 36 — 36 lncRNA

ENST00000507099, ENST00000508724, ENST00000513875, ENST00000514892, ENST00000652794, ENST00000653703, ENST00000654252, ENST00000654449, ENST00000655596, ENST00000657114, ENST00000657591, ENST00000657768, ENST00000657908, ENST00000658130, ENST00000659073, ENST00000660303, ENST00000660340, ENST00000661425, ENST00000663075, ENST00000663608, ENST00000663850, ENST00000663986, ENST00000664364, ENST00000664657, ENST00000666766, ENST00000668510, ENST00000669757, ENST00000671223, ENST00000760978, ENST00000760979, ENST00000760980, ENST00000760981, ENST00000760982, ENST00000830778, ENST00000830779, ENST00000830780

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507099 — 4 exons

Exon	Start	End
ENSE00002023786	129900538	129900654
ENSE00002035194	129862568	129862768
ENSE00002042516	129837361	129837425
ENSE00002061691	129928568	129928716

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 80.86.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0074 / max 6.3152, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
49661	0.0074	3

Top tissues by expression

199 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.96	gold quality
oocyte	CL:0000023	66.27	silver quality
sural nerve	UBERON:0015488	65.96	gold quality
ventricular zone	UBERON:0003053	65.83	gold quality
cortical plate	UBERON:0005343	65.72	gold quality
right testis	UBERON:0004534	64.56	gold quality
left testis	UBERON:0004533	61.75	gold quality
testis	UBERON:0000473	61.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.93	gold quality
ganglionic eminence	UBERON:0004023	59.87	gold quality
stromal cell of endometrium	CL:0002255	56.70	gold quality
monocyte	CL:0000576	56.61	gold quality
islet of Langerhans	UBERON:0000006	55.09	gold quality
sperm	CL:0000019	51.99	gold quality
prefrontal cortex	UBERON:0000451	51.56	gold quality
vermiform appendix	UBERON:0001154	49.89	gold quality
mucosa of transverse colon	UBERON:0004991	48.94	gold quality
muscle of leg	UBERON:0001383	47.55	silver quality
descending thoracic aorta	UBERON:0002345	47.48	gold quality
gastrocnemius	UBERON:0001388	47.00	silver quality
gall bladder	UBERON:0002110	46.96	gold quality
right lobe of liver	UBERON:0001114	46.80	gold quality
pancreas	UBERON:0001264	45.56	gold quality
cortex of kidney	UBERON:0001225	45.43	gold quality
liver	UBERON:0002107	44.98	gold quality
duodenum	UBERON:0002114	44.87	gold quality
frontal cortex	UBERON:0001870	44.52	gold quality
cerebellar cortex	UBERON:0002129	44.47	silver quality
neocortex	UBERON:0001950	44.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.