LINC02470

Summary

LINC02470 (long intergenic non-protein coding RNA 2470, HGNC:53409) is a long non-coding RNA gene on chromosome 12p13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53409
Approved symbol	LINC02470
Name	long intergenic non-protein coding RNA 2470
Location	12p13.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC091814.2
Ensembl gene	ENSG00000225231
Ensembl biotype	lncRNA
Entrez	100506159
RNAcentral	URS000075D3CE — lncRNA, 992 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000412084, ENST00000655933, ENST00000663603, ENST00000667501, ENST00000670937, ENST00000768951, ENST00000768952, ENST00000768953, ENST00000768954

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412084 — 5 exons

Exon	Start	End
ENSE00001650149	9942489	9942572
ENSE00001650163	9939063	9939170
ENSE00001747024	9939909	9940093
ENSE00004129703	9936417	9936814
ENSE00004129714	9943130	9943496

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 75.28.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.4079 / max 112.1856, expressed in 116 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
129451	0.1661	67
129450	0.1261	47
129449	0.1157	34

Top tissues by expression

109 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	75.28	gold quality
monocyte	CL:0000576	73.70	gold quality
leukocyte	CL:0000738	72.83	gold quality
cortex of kidney	UBERON:0001225	71.23	gold quality
primary visual cortex	UBERON:0002436	71.20	gold quality
bone marrow	UBERON:0002371	70.14	gold quality
cortical plate	UBERON:0005343	65.72	gold quality
adult mammalian kidney	UBERON:0000082	63.18	gold quality
ganglionic eminence	UBERON:0004023	63.12	gold quality
blood	UBERON:0000178	61.83	gold quality
calcaneal tendon	UBERON:0003701	60.44	gold quality
kidney	UBERON:0002113	59.97	gold quality
Ammon’s horn	UBERON:0001954	59.96	gold quality
substantia nigra	UBERON:0002038	59.65	gold quality
amygdala	UBERON:0001876	58.86	gold quality
prefrontal cortex	UBERON:0000451	58.29	gold quality
cerebellar cortex	UBERON:0002129	58.16	gold quality
cerebellum	UBERON:0002037	58.15	gold quality
cerebellar hemisphere	UBERON:0002245	58.04	gold quality
right hemisphere of cerebellum	UBERON:0014890	57.47	gold quality
hypothalamus	UBERON:0001898	57.42	gold quality
lymph node	UBERON:0000029	56.79	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.78	gold quality
frontal cortex	UBERON:0001870	55.63	gold quality
brain	UBERON:0000955	55.56	gold quality
cerebral cortex	UBERON:0000956	55.50	gold quality
pituitary gland	UBERON:0000007	55.13	gold quality
superior frontal gyrus	UBERON:0002661	54.67	gold quality
anterior cingulate cortex	UBERON:0009835	54.53	gold quality
right testis	UBERON:0004534	54.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Exosome-Derived LINC00960 and LINC02470 Promote the Epithelial-Mesenchymal Transition and Aggressiveness of Bladder Cancer Cells. (PMID:32517366)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.