LINC02471

Summary

LINC02471 (long intergenic non-protein coding RNA 2471, HGNC:53410) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53410
Approved symbol	LINC02471
Name	long intergenic non-protein coding RNA 2471
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC079630.2
Ensembl gene	ENSG00000223914
Ensembl biotype	lncRNA
Entrez	105369734
RNAcentral	URS0000BC44A2 — lncRNA, 705 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000417422, ENST00000641941, ENST00000661406, ENST00000663154, ENST00000669755, ENST00000783096, ENST00000783097, ENST00000783098

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417422 — 2 exons

Exon	Start	End
ENSE00001801539	40167248	40167847
ENSE00001803212	40166252	40166350

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 73.09.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0633 / max 20.5261, expressed in 28 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
125030	0.0456	23
125029	0.0177	8

Top tissues by expression

107 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.09	gold quality
metanephros cortex	UBERON:0010533	68.90	gold quality
adult mammalian kidney	UBERON:0000082	68.20	gold quality
cortex of kidney	UBERON:0001225	68.19	gold quality
kidney	UBERON:0002113	68.14	gold quality
lung	UBERON:0002048	67.72	gold quality
upper lobe of left lung	UBERON:0008952	66.25	gold quality
esophagus mucosa	UBERON:0002469	66.01	gold quality
right lung	UBERON:0002167	64.64	gold quality
lower esophagus mucosa	UBERON:0035834	62.12	gold quality
monocyte	CL:0000576	59.27	gold quality
vagina	UBERON:0000996	58.24	gold quality
blood	UBERON:0000178	57.92	gold quality
lymph node	UBERON:0000029	57.81	gold quality
esophagus	UBERON:0001043	57.49	gold quality
islet of Langerhans	UBERON:0000006	56.88	gold quality
right lobe of thyroid gland	UBERON:0001119	55.57	gold quality
tonsil	UBERON:0002372	54.87	gold quality
pancreas	UBERON:0001264	54.67	gold quality
skeletal muscle tissue	UBERON:0001134	53.18	silver quality
primary visual cortex	UBERON:0002436	52.61	gold quality
prefrontal cortex	UBERON:0000451	52.49	gold quality
minor salivary gland	UBERON:0001830	52.22	gold quality
calcaneal tendon	UBERON:0003701	52.16	silver quality
vermiform appendix	UBERON:0001154	52.15	gold quality
left lobe of thyroid gland	UBERON:0001120	51.13	gold quality
thyroid gland	UBERON:0002046	50.29	gold quality
hindlimb stylopod muscle	UBERON:0004252	49.62	silver quality
ectocervix	UBERON:0012249	49.50	gold quality
nucleus accumbens	UBERON:0001882	49.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	9.68

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.