LINC02472

Summary

LINC02472 (long intergenic non-protein coding RNA 2472, HGNC:53411) is a long non-coding RNA gene on chromosome 4p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53411
Approved symbol	LINC02472
Name	long intergenic non-protein coding RNA 2472
Location	4p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248338
Ensembl biotype	lncRNA
Entrez	105374561
RNAcentral	URS0000BC44FF — lncRNA, 681 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000512268, ENST00000654464, ENST00000658572, ENST00000834156, ENST00000834157

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512268 — 3 exons

Exon	Start	End
ENSE00002037174	29215288	29215486
ENSE00004251425	29214263	29214454
ENSE00004251427	29220844	29221166

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 98.29.

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
caudate nucleus	UBERON:0001873	98.29	silver quality
cerebellar vermis	UBERON:0004720	97.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.24	gold quality
skeletal muscle tissue	UBERON:0001134	75.06	silver quality
kidney	UBERON:0002113	71.07	silver quality
thymus	UBERON:0002370	64.38	silver quality
prostate gland	UBERON:0002367	64.20	silver quality
temporal lobe	UBERON:0001871	60.39	gold quality
monocyte	CL:0000576	58.87	gold quality
cerebellar cortex	UBERON:0002129	56.29	silver quality
prefrontal cortex	UBERON:0000451	54.51	gold quality
superior frontal gyrus	UBERON:0002661	54.40	gold quality
blood	UBERON:0000178	50.12	silver quality
frontal cortex	UBERON:0001870	48.94	gold quality
testis	UBERON:0000473	47.78	gold quality
left testis	UBERON:0004533	47.57	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.07	gold quality
right testis	UBERON:0004534	46.93	gold quality
multicellular organism	UBERON:0000468	46.43	gold quality
Ammon’s horn	UBERON:0001954	46.06	silver quality
nucleus accumbens	UBERON:0001882	45.80	gold quality
gastrocnemius	UBERON:0001388	45.13	silver quality
brain	UBERON:0000955	44.89	gold quality
cerebral cortex	UBERON:0000956	44.82	gold quality
body of pancreas	UBERON:0001150	43.65	silver quality
muscle layer of sigmoid colon	UBERON:0035805	43.00	gold quality
tibial artery	UBERON:0007610	42.99	silver quality
skin of leg	UBERON:0001511	42.92	silver quality
esophagus mucosa	UBERON:0002469	42.27	gold quality
adrenal gland	UBERON:0002369	42.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.