LINC02474

Summary

LINC02474 (long intergenic non-protein coding RNA 2474, HGNC:53417) is a long non-coding RNA gene on chromosome 1q41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53417
Approved symbol	LINC02474
Name	long intergenic non-protein coding RNA 2474
Location	1q41
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-400N13.2, lncSLCC1
Ensembl gene	ENSG00000228437
Ensembl biotype	lncRNA
Entrez	110806276
RNAcentral	URS0000BC4419 — lncRNA, 441 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000421147, ENST00000441160

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421147 — 3 exons

Exon	Start	End
ENSE00001638400	221968348	221968496
ENSE00001688309	221983000	221983143
ENSE00001797393	221966341	221966502

Expression profiles

Bgee: expression breadth ubiquitous, 121 present calls, max score 81.43.

Top tissues by expression

121 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.43	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.46	gold quality
colonic epithelium	UBERON:0000397	77.11	gold quality
endometrium	UBERON:0001295	64.03	gold quality
sural nerve	UBERON:0015488	61.15	silver quality
islet of Langerhans	UBERON:0000006	60.53	gold quality
adrenal tissue	UBERON:0018303	59.21	gold quality
left ovary	UBERON:0002119	57.28	gold quality
calcaneal tendon	UBERON:0003701	57.28	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.96	gold quality
ganglionic eminence	UBERON:0004023	56.86	gold quality
ovary	UBERON:0000992	56.81	gold quality
mucosa of stomach	UBERON:0001199	56.52	gold quality
right ovary	UBERON:0002118	55.84	gold quality
right adrenal gland cortex	UBERON:0035827	55.83	gold quality
body of uterus	UBERON:0009853	55.72	gold quality
myometrium	UBERON:0001296	55.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.40	gold quality
left lobe of thyroid gland	UBERON:0001120	55.25	gold quality
duodenum	UBERON:0002114	54.98	gold quality
ectocervix	UBERON:0012249	54.98	gold quality
pituitary gland	UBERON:0000007	54.92	gold quality
thyroid gland	UBERON:0002046	54.90	gold quality
adrenal gland	UBERON:0002369	54.49	gold quality
pancreas	UBERON:0001264	54.38	gold quality
right adrenal gland	UBERON:0001233	54.27	gold quality
monocyte	CL:0000576	54.18	gold quality
left adrenal gland	UBERON:0001234	54.02	gold quality
right lobe of thyroid gland	UBERON:0001119	53.70	gold quality
stromal cell of endometrium	CL:0002255	53.43	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.