LINC02475

Summary

LINC02475 (long intergenic non-protein coding RNA 2475, HGNC:53418) is a long non-coding RNA gene on chromosome 4p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53418
Approved symbol	LINC02475
Name	long intergenic non-protein coding RNA 2475
Location	4p13
Locus type	RNA, long non-coding
Status	Approved
Aliases	LVCAT1
Ensembl gene	ENSG00000251350
Ensembl biotype	lncRNA
Entrez	100506827
RNAcentral	URS00008E39F7 — lncRNA, 2513 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000507639, ENST00000512678, ENST00000655776, ENST00000668491, ENST00000780275

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507639 — 2 exons

Exon	Start	End
ENSE00002049907	44016861	44017062
ENSE00002074353	44019751	44020256

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 85.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0179 / max 9.0217, expressed in 6 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
47532	0.0179	6

Top tissues by expression

203 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	85.62	gold quality
right testis	UBERON:0004534	83.94	gold quality
testis	UBERON:0000473	82.11	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.71	gold quality
colonic epithelium	UBERON:0000397	66.40	silver quality
ventricular zone	UBERON:0003053	62.93	gold quality
ganglionic eminence	UBERON:0004023	57.05	gold quality
monocyte	CL:0000576	54.97	gold quality
prefrontal cortex	UBERON:0000451	53.91	gold quality
right lobe of liver	UBERON:0001114	53.19	silver quality
nucleus accumbens	UBERON:0001882	51.35	gold quality
right frontal lobe	UBERON:0002810	51.30	gold quality
adenohypophysis	UBERON:0002196	51.24	gold quality
islet of Langerhans	UBERON:0000006	50.88	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.74	gold quality
vermiform appendix	UBERON:0001154	50.10	gold quality
right hemisphere of cerebellum	UBERON:0014890	50.08	gold quality
caudate nucleus	UBERON:0001873	49.83	gold quality
frontal cortex	UBERON:0001870	49.78	gold quality
neocortex	UBERON:0001950	49.50	gold quality
anterior cingulate cortex	UBERON:0009835	49.29	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.16	gold quality
calcaneal tendon	UBERON:0003701	47.90	silver quality
cerebellar hemisphere	UBERON:0002245	47.52	gold quality
cerebral cortex	UBERON:0000956	47.37	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.22	gold quality
smooth muscle tissue	UBERON:0001135	47.19	gold quality
muscle of leg	UBERON:0001383	47.13	gold quality
forebrain	UBERON:0001890	47.10	gold quality
pancreas	UBERON:0001264	46.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.