LINC02476

Summary

LINC02476 (long intergenic non-protein coding RNA 2476, HGNC:53419) is a long non-coding RNA gene on chromosome 7q31.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53419
Approved symbol	LINC02476
Name	long intergenic non-protein coding RNA 2476
Location	7q31.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	LVCAT5, lnc-TSPAN12
Ensembl gene	ENSG00000225546
Ensembl biotype	lncRNA
Entrez	105375475
RNAcentral	URS00005A434E — lncRNA, 559 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000426413, ENST00000431071, ENST00000660268, ENST00000804423, ENST00000804424, ENST00000804425, ENST00000804426

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426413 — 4 exons

Exon	Start	End
ENSE00001643419	119800816	119800874
ENSE00001696446	119750809	119752175
ENSE00001761220	119782284	119782357
ENSE00003865825	119907293	119907397

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 83.09.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6328 / max 112.1875, expressed in 120 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
85873	0.6328	120

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.09	gold quality
adrenal tissue	UBERON:0018303	79.87	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.30	gold quality
sural nerve	UBERON:0015488	63.37	silver quality
endometrium	UBERON:0001295	61.23	gold quality
ganglionic eminence	UBERON:0004023	60.67	gold quality
cortical plate	UBERON:0005343	59.55	gold quality
right adrenal gland cortex	UBERON:0035827	58.89	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.04	silver quality
adrenal gland	UBERON:0002369	57.78	gold quality
cortex of kidney	UBERON:0001225	57.16	gold quality
right adrenal gland	UBERON:0001233	56.55	gold quality
left adrenal gland	UBERON:0001234	55.53	gold quality
gall bladder	UBERON:0002110	55.12	gold quality
monocyte	CL:0000576	54.91	gold quality
left adrenal gland cortex	UBERON:0035825	54.56	gold quality
calcaneal tendon	UBERON:0003701	54.36	silver quality
left ovary	UBERON:0002119	54.31	gold quality
ovary	UBERON:0000992	53.97	gold quality
superior frontal gyrus	UBERON:0002661	53.83	gold quality
liver	UBERON:0002107	52.86	gold quality
blood	UBERON:0000178	51.28	gold quality
right lobe of liver	UBERON:0001114	49.96	gold quality
fundus of stomach	UBERON:0001160	49.76	gold quality
primary visual cortex	UBERON:0002436	49.65	gold quality
kidney	UBERON:0002113	49.39	gold quality
cerebellum	UBERON:0002037	49.08	gold quality
cerebellar cortex	UBERON:0002129	49.07	gold quality
popliteal artery	UBERON:0002250	49.04	gold quality
tibial artery	UBERON:0007610	49.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.