LINC02477

Summary

LINC02477 (long intergenic non-protein coding RNA 2477, HGNC:53425) is a long non-coding RNA gene on chromosome 4q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53425
Approved symbol	LINC02477
Name	long intergenic non-protein coding RNA 2477
Location	4q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249425
Ensembl biotype	lncRNA
Entrez	105377512
RNAcentral	URS00001B8B7F — lncRNA, 1417 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000512652

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000512652 — 5 exons

Exon	Start	End
ENSE00002048954	160554045	160554131
ENSE00002054265	160539254	160539840
ENSE00002067952	160586246	160586817
ENSE00002070960	160545369	160545481
ENSE00002071326	160541991	160542048

Expression profiles

Bgee: expression breadth broad, 50 present calls, max score 82.06.

Top tissues by expression

50 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.06	gold quality
body of pancreas	UBERON:0001150	67.51	gold quality
pancreas	UBERON:0001264	67.29	gold quality
ventricular zone	UBERON:0003053	60.18	gold quality
ganglionic eminence	UBERON:0004023	58.65	gold quality
lung	UBERON:0002048	56.52	gold quality
left adrenal gland cortex	UBERON:0035825	54.80	gold quality
adrenal tissue	UBERON:0018303	54.76	gold quality
right adrenal gland cortex	UBERON:0035827	54.73	gold quality
endometrium	UBERON:0001295	53.99	silver quality
prefrontal cortex	UBERON:0000451	53.65	silver quality
adrenal gland	UBERON:0002369	53.65	gold quality
left adrenal gland	UBERON:0001234	53.44	gold quality
right adrenal gland	UBERON:0001233	53.16	gold quality
liver	UBERON:0002107	52.64	gold quality
blood	UBERON:0000178	51.49	silver quality
calcaneal tendon	UBERON:0003701	51.34	silver quality
metanephros cortex	UBERON:0010533	48.47	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.99	gold quality
fundus of stomach	UBERON:0001160	47.85	gold quality
nucleus accumbens	UBERON:0001882	46.34	silver quality
skin of leg	UBERON:0001511	45.90	gold quality
zone of skin	UBERON:0000014	45.35	gold quality
Ammon’s horn	UBERON:0001954	45.12	gold quality
stomach	UBERON:0000945	45.11	gold quality
body of stomach	UBERON:0001161	44.86	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.83	silver quality
amygdala	UBERON:0001876	44.81	gold quality
kidney	UBERON:0002113	44.54	gold quality
hypothalamus	UBERON:0001898	43.42	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.