LINC02480

Summary

LINC02480 (long intergenic non-protein coding RNA 2480, HGNC:53454) is a long non-coding RNA gene on chromosome 4q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53454
Approved symbol	LINC02480
Name	long intergenic non-protein coding RNA 2480
Location	4q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251040
Ensembl biotype	lncRNA
Entrez	105377652
RNAcentral	URS0002A6F83E — lncRNA, 646 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000511875, ENST00000746758, ENST00000746759, ENST00000746760, ENST00000746761, ENST00000746762, ENST00000746763

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000511875 — 3 exons

Exon	Start	End
ENSE00002046653	52046025	52046129
ENSE00004088013	52046679	52046954
ENSE00004088020	52044771	52045035

Expression profiles

Bgee: expression breadth broad, 44 present calls, max score 91.39.

Top tissues by expression

44 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.39	gold quality
right testis	UBERON:0004534	75.71	gold quality
left testis	UBERON:0004533	75.66	gold quality
testis	UBERON:0000473	75.19	gold quality
multicellular organism	UBERON:0000468	62.50	gold quality
blood	UBERON:0000178	51.21	gold quality
skin of leg	UBERON:0001511	48.89	gold quality
gall bladder	UBERON:0002110	48.36	gold quality
body of pancreas	UBERON:0001150	47.90	silver quality
gastrocnemius	UBERON:0001388	46.53	gold quality
caudate nucleus	UBERON:0001873	45.55	silver quality
hypothalamus	UBERON:0001898	45.46	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.37	gold quality
tibial artery	UBERON:0007610	43.20	silver quality
transverse colon	UBERON:0001157	42.94	gold quality
fallopian tube	UBERON:0003889	42.94	gold quality
urinary bladder	UBERON:0001255	42.88	silver quality
Ammon’s horn	UBERON:0001954	42.69	gold quality
ascending aorta	UBERON:0001496	42.31	silver quality
colon	UBERON:0001155	41.67	gold quality
esophagus mucosa	UBERON:0002469	41.46	silver quality
tibial nerve	UBERON:0001323	41.28	gold quality
heart left ventricle	UBERON:0002084	41.13	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.90	silver quality
left lobe of thyroid gland	UBERON:0001120	40.67	silver quality
thoracic mammary gland	UBERON:0005200	40.30	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.99	silver quality
putamen	UBERON:0001874	39.96	silver quality
left adrenal gland	UBERON:0001234	39.88	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	39.74	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.