LINC02481

Summary

LINC02481 (long intergenic non-protein coding RNA 2481, HGNC:27958) is a long non-coding RNA gene on chromosome 4p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27958
Approved symbol	LINC02481
Name	long intergenic non-protein coding RNA 2481
Location	4p16.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000246526
Ensembl biotype	lncRNA
Entrez	339988
RNAcentral	URS000061227E — lncRNA, 1821 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000499502, ENST00000733468, ENST00000733469, ENST00000733470, ENST00000733471

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000499502 — 3 exons

Exon	Start	End
ENSE00001970526	6690299	6690544
ENSE00001974310	6689309	6689459
ENSE00001987148	6687448	6688896

Expression profiles

Bgee: expression breadth ubiquitous, 174 present calls, max score 92.79.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0979 / max 9.6949, expressed in 45 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
51267	0.0561	36
51268	0.0417	26

Top tissues by expression

226 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	92.79	gold quality
amniotic fluid	UBERON:0000173	86.71	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.52	gold quality
granulocyte	CL:0000094	79.35	gold quality
epithelium of nasopharynx	UBERON:0001951	74.49	silver quality
visceral pleura	UBERON:0002401	74.28	silver quality
tendon of biceps brachii	UBERON:0008188	73.71	silver quality
blood	UBERON:0000178	73.40	gold quality
parietal pleura	UBERON:0002400	71.58	silver quality
bronchial epithelial cell	CL:0002328	71.44	gold quality
bronchus	UBERON:0002185	71.30	gold quality
pericardium	UBERON:0002407	71.02	silver quality
cardia of stomach	UBERON:0001162	70.98	silver quality
corpus callosum	UBERON:0002336	70.51	silver quality
cerebellar vermis	UBERON:0004720	70.30	silver quality
pylorus	UBERON:0001166	70.26	silver quality
trachea	UBERON:0003126	70.18	silver quality
buccal mucosa cell	CL:0002336	69.87	silver quality
jejunum	UBERON:0002115	69.71	silver quality
superior surface of tongue	UBERON:0007371	69.00	silver quality
renal medulla	UBERON:0000362	68.97	silver quality
saphenous vein	UBERON:0007318	68.96	silver quality
vena cava	UBERON:0004087	68.52	gold quality
subthalamic nucleus	UBERON:0001906	68.39	gold quality
jejunal mucosa	UBERON:0000399	68.15	silver quality
dorsal plus ventral thalamus	UBERON:0001897	68.14	gold quality
body of tongue	UBERON:0011876	68.05	gold quality
lateral globus pallidus	UBERON:0002476	67.91	gold quality
substantia nigra pars reticulata	UBERON:0001966	67.89	gold quality
substantia nigra pars compacta	UBERON:0001965	67.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.