LINC02484

Summary

LINC02484 (long intergenic non-protein coding RNA 2484, HGNC:53459) is a long non-coding RNA gene on chromosome 4p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53459
Approved symbol	LINC02484
Name	long intergenic non-protein coding RNA 2484
Location	4p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248685
Ensembl biotype	lncRNA
Entrez	105374394
RNAcentral	URS0000BC45FC — lncRNA, 372 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000513843, ENST00000514877, ENST00000656859, ENST00000658479, ENST00000758394, ENST00000758395, ENST00000758396, ENST00000758397

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513843 — 5 exons

Exon	Start	End
ENSE00002039496	34259087	34259226
ENSE00002058389	34125801	34125862
ENSE00002074574	34121261	34121455
ENSE00004110268	34269623	34269778
ENSE00004110275	34119021	34121141

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 86.00.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1347 / max 66.2844, expressed in 37 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
51743	0.1168	32
51742	0.0147	5
51741	0.0033	2

Top tissues by expression

90 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.00	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.66	gold quality
bone marrow cell	CL:0002092	81.83	gold quality
skeletal muscle tissue	UBERON:0001134	74.56	gold quality
liver	UBERON:0002107	74.29	gold quality
right lobe of liver	UBERON:0001114	71.23	gold quality
uterine cervix	UBERON:0000002	70.92	gold quality
urinary bladder	UBERON:0001255	68.80	gold quality
tonsil	UBERON:0002372	64.81	gold quality
cortical plate	UBERON:0005343	64.04	gold quality
ganglionic eminence	UBERON:0004023	60.39	gold quality
primary visual cortex	UBERON:0002436	56.85	gold quality
placenta	UBERON:0001987	55.96	gold quality
myometrium	UBERON:0001296	55.00	silver quality
monocyte	CL:0000576	54.38	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.91	silver quality
blood	UBERON:0000178	52.76	gold quality
gastrocnemius	UBERON:0001388	52.71	gold quality
muscle of leg	UBERON:0001383	52.65	gold quality
vermiform appendix	UBERON:0001154	51.43	gold quality
prostate gland	UBERON:0002367	51.34	silver quality
lymph node	UBERON:0000029	51.07	gold quality
islet of Langerhans	UBERON:0000006	50.95	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.22	gold quality
adrenal gland	UBERON:0002369	49.86	silver quality
small intestine	UBERON:0002108	49.83	silver quality
thyroid gland	UBERON:0002046	49.27	gold quality
multicellular organism	UBERON:0000468	49.16	gold quality
ovary	UBERON:0000992	49.14	silver quality
lung	UBERON:0002048	48.84	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.