LINC02485

Summary

LINC02485 (long intergenic non-protein coding RNA 2485, HGNC:53460) is a long non-coding RNA gene on chromosome 4q28.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53460
Approved symbol	LINC02485
Name	long intergenic non-protein coding RNA 2485
Location	4q28.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248456
Ensembl biotype	lncRNA
Entrez	105377439
RNAcentral	URS0000BC4651 — lncRNA, 412 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000506412, ENST00000511899, ENST00000833031

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506412 — 3 exons

Exon	Start	End
ENSE00002054704	135123482	135123559
ENSE00004249145	135123747	135123780
ENSE00004249146	135120756	135121445

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 93.96.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0400 / max 4.7926, expressed in 18 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
53966	0.0400	18

Top tissues by expression

72 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.96	gold quality
placenta	UBERON:0001987	63.17	gold quality
calcaneal tendon	UBERON:0003701	61.01	gold quality
monocyte	CL:0000576	60.96	gold quality
liver	UBERON:0002107	60.51	gold quality
blood	UBERON:0000178	60.43	gold quality
kidney	UBERON:0002113	56.23	gold quality
gastrocnemius	UBERON:0001388	55.59	gold quality
adult mammalian kidney	UBERON:0000082	54.75	gold quality
right lobe of liver	UBERON:0001114	54.75	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	52.17	gold quality
heart left ventricle	UBERON:0002084	52.07	gold quality
prefrontal cortex	UBERON:0000451	52.00	gold quality
adrenal gland	UBERON:0002369	51.71	gold quality
left adrenal gland	UBERON:0001234	51.53	gold quality
amygdala	UBERON:0001876	51.41	gold quality
tibial artery	UBERON:0007610	50.96	gold quality
anterior cingulate cortex	UBERON:0009835	50.92	gold quality
thoracic mammary gland	UBERON:0005200	50.81	gold quality
adenohypophysis	UBERON:0002196	50.78	gold quality
thoracic aorta	UBERON:0001515	50.49	gold quality
ascending aorta	UBERON:0001496	49.87	gold quality
muscle layer of sigmoid colon	UBERON:0035805	48.78	gold quality
lower esophagus muscularis layer	UBERON:0035833	48.50	gold quality
substantia nigra	UBERON:0002038	48.33	gold quality
body of stomach	UBERON:0001161	48.28	gold quality
adrenal tissue	UBERON:0018303	47.90	silver quality
lung	UBERON:0002048	47.71	gold quality
subcutaneous adipose tissue	UBERON:0002190	47.61	gold quality
right adrenal gland cortex	UBERON:0035827	47.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.