LINC02494

Summary

LINC02494 (long intergenic non-protein coding RNA 2494, HGNC:53479) is a long non-coding RNA gene on chromosome 4q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53479
Approved symbol	LINC02494
Name	long intergenic non-protein coding RNA 2494
Location	4q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250340
Ensembl biotype	lncRNA
Entrez	105377671
RNAcentral	URS0000A77449 — lncRNA, 431 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000508292, ENST00000509824, ENST00000805038, ENST00000805039

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508292 — 3 exons

Exon	Start	End
ENSE00002019723	58563507	58563717
ENSE00004196924	58565069	58565226
ENSE00004196927	58562001	58562319

Expression profiles

Bgee: expression breadth broad, 26 present calls, max score 87.34.

Top tissues by expression

26 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.34	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.07	gold quality
sural nerve	UBERON:0015488	58.53	silver quality
monocyte	CL:0000576	56.74	gold quality
left testis	UBERON:0004533	54.60	gold quality
cerebellar cortex	UBERON:0002129	54.20	gold quality
right testis	UBERON:0004534	54.18	gold quality
testis	UBERON:0000473	54.16	gold quality
minor salivary gland	UBERON:0001830	52.36	gold quality
multicellular organism	UBERON:0000468	51.33	gold quality
gastrocnemius	UBERON:0001388	51.05	gold quality
esophagus mucosa	UBERON:0002469	47.80	gold quality
lower esophagus muscularis layer	UBERON:0035833	45.81	gold quality
skin of leg	UBERON:0001511	45.35	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.61	gold quality
right atrium auricular region	UBERON:0006631	44.44	silver quality
Ammon’s horn	UBERON:0001954	43.33	gold quality
tibial nerve	UBERON:0001323	41.27	silver quality
omental fat pad	UBERON:0010414	41.22	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	41.21	gold quality
hypothalamus	UBERON:0001898	41.00	silver quality
skin of abdomen	UBERON:0001416	40.78	silver quality
lung	UBERON:0002048	39.05	silver quality
substantia nigra	UBERON:0002038	38.47	silver quality
nucleus accumbens	UBERON:0001882	36.50	silver quality
left lobe of thyroid gland	UBERON:0001120	33.95	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.